Analysis of interatomic Contacts of Structural Units in PDB entry:
7DQ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DQ1 entry

There are 5 chains in PDB entry 7DQ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 12THR 278
2
 SER 10SER 261
3
 GLY 1TYR 237
4
 GLN 4LEU 68
K
 LEU 20VAL 137
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7DQ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
33 37Right-handed 310
Helix 2
AA2
1
43 47Right-handed 310
Helix 3
AA3
1
63 68Right-handed alpha
Helix 4
AA4
1
100 105Right-handed alpha
Helix 5
AA5
2
82 86Right-handed alpha
Helix 6
AA6
2
90 99Right-handed alpha
Helix 7
AA7
2
171 175Right-handed 310
Helix 8
AA8
2
180 187Right-handed 310
Helix 9
AA9
3
42 46Right-handed 310
Helix 10
AB1
3
65 69Right-handed 310
Helix 11
AB2
3
100 105Right-handed alpha
Helix 12
AB3
3
144 149Right-handed alpha
Helix 13
AB4
4
50 55Right-handed alpha
Helix 14
AB5
K
97 101Right-handed 310
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There are 16 sheets in PDB entry 7DQ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
31 32first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 121anti-parallel
Strand 4
3
208 216anti-parallel
Strand 5
3
51 52anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
31 32first strand
Strand 2
3
163 168anti-parallel
Strand 3
3
114 121anti-parallel
Strand 4
3
208 216anti-parallel
Strand 5
3
70 72anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
72 80first strand
Strand 2
1
229 237anti-parallel
Strand 3
1
107 124anti-parallel
Strand 4
1
189 190anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
177 180first strand
Strand 2
1
107 124anti-parallel
Strand 3
1
240 247anti-parallel
Strand 4
3
39 40anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
88 91first strand
Strand 2
1
215 220anti-parallel
Strand 3
1
138 144anti-parallel
Strand 4
1
166 170anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
199 204parallel
Strand 3
2
103 111anti-parallel
Strand 4
2
242 247anti-parallel
Strand 5
2
64 70anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
199 204parallel
Strand 3
2
103 111anti-parallel
Strand 4
2
249 253anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
153 154first strand
Strand 2
2
78 81anti-parallel
Strand 3
2
222 232anti-parallel
Strand 4
2
119 126anti-parallel
Strand 5
2
189 193anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
81 86first strand
Strand 2
3
189 194anti-parallel
Strand 3
3
129 135anti-parallel
Strand 4
3
152 157anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
177 178first strand
Strand 2
3
109 111anti-parallel
Strand 3
3
221 223anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
5 7first strand
Strand 2
4
26 28anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
21 22first strand
Strand 2
K
43 44anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
26 30first strand
Strand 2
K
132 136parallel
Strand 3
K
116 119anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
37 39first strand
Strand 2
K
105 107anti-parallel
Strand 3
K
91 93anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
55 57first strand
Strand 2
K
72 75anti-parallel
Strand 3
K
78 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il