Analysis of interatomic Contacts of Structural Units in PDB entry:
7DQ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DQ6 entry

There are 2 chains in PDB entry 7DQ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 9	ARG 528
B	ARG 9	ARG 528

There are 32 helices in PDB entry 7DQ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	51	67	Right-handed alpha
Helix 3	AA3	A	83	96	Right-handed alpha
Helix 4	AA4	A	108	120	Right-handed alpha
Helix 5	AA5	A	190	203	Right-handed alpha
Helix 6	AA6	A	220	234	Right-handed alpha
Helix 7	AA7	A	241	247	Right-handed alpha
Helix 8	AA8	A	247	259	Right-handed alpha
Helix 9	AA9	A	266	269	Right-handed 310
Helix 10	AB1	A	270	277	Right-handed alpha
Helix 11	AB2	A	277	282	Right-handed alpha
Helix 12	AB3	A	298	309	Right-handed alpha
Helix 13	AB4	A	320	324	Right-handed 310
Helix 14	AB5	A	386	393	Right-handed alpha
Helix 15	AB6	A	429	431	Right-handed 310
Helix 16	AB7	A	445	449	Right-handed alpha
Helix 17	AB8	A	521	527	Right-handed alpha
Helix 18	AB9	B	19	31	Right-handed alpha
Helix 19	AC1	B	51	67	Right-handed alpha
Helix 20	AC2	B	83	96	Right-handed alpha
Helix 21	AC3	B	108	120	Right-handed alpha
Helix 22	AC4	B	190	203	Right-handed alpha
Helix 23	AC5	B	220	234	Right-handed alpha
Helix 24	AC6	B	241	247	Right-handed alpha
Helix 25	AC7	B	247	259	Right-handed alpha
Helix 26	AC8	B	266	269	Right-handed 310
Helix 27	AC9	B	270	277	Right-handed alpha
Helix 28	AD1	B	277	282	Right-handed alpha
Helix 29	AD2	B	298	309	Right-handed alpha
Helix 30	AD3	B	320	324	Right-handed 310
Helix 31	AD4	B	386	393	Right-handed alpha
Helix 32	AD5	B	521	527	Right-handed alpha

There are 14 sheets in PDB entry 7DQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	47	50	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	103	first strand
Strand 2	A	76	79	parallel
Strand 3	A	123	127	parallel
Strand 4	A	140	145	parallel
Strand 5	A	148	153	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	185	189	anti-parallel
Strand 3	A	382	383	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	211	214	parallel
Strand 3	A	262	264	parallel
Strand 4	A	289	292	parallel
Strand 5	A	313	318	parallel
Strand 6	A	327	330	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	370	375	anti-parallel
Strand 3	A	406	416	anti-parallel
Strand 4	A	394	396	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	370	375	anti-parallel
Strand 3	A	406	416	anti-parallel
Strand 4	A	422	427	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	456	460	first strand
Strand 2	A	472	476	anti-parallel
Strand 3	A	507	509	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	47	50	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	103	first strand
Strand 2	B	76	79	parallel
Strand 3	B	123	127	parallel
Strand 4	B	140	145	parallel
Strand 5	B	148	153	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	177	first strand
Strand 2	B	183	189	anti-parallel
Strand 3	B	382	383	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	211	214	parallel
Strand 3	B	262	264	parallel
Strand 4	B	289	292	parallel
Strand 5	B	313	318	parallel
Strand 6	B	327	330	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	370	375	anti-parallel
Strand 3	B	406	416	anti-parallel
Strand 4	B	394	396	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	370	375	anti-parallel
Strand 3	B	406	416	anti-parallel
Strand 4	B	422	427	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	459	462	first strand
Strand 2	B	470	473	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DQ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DQ6