Analysis of interatomic Contacts of Structural Units in PDB entry:
7DQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DQ9 entry

There are 4 chains in PDB entry 7DQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 265
B
 MET 1GLY 265
C
 MET 1GLY 265
D
 MET 1GLY 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 7DQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 39Right-handed 310
Helix 2
AA2
A
41 45Right-handed 310
Helix 3
AA3
A
70 86Right-handed alpha
Helix 4
AA4
A
96 109Right-handed alpha
Helix 5
AA5
A
127 143Right-handed alpha
Helix 6
AA6
A
145 147Right-handed 310
Helix 7
AA7
A
148 157Right-handed alpha
Helix 8
AA8
A
159 163Right-handed 310
Helix 9
AA9
A
166 179Right-handed alpha
Helix 10
AB1
A
181 195Right-handed alpha
Helix 11
AB2
A
198 205Right-handed alpha
Helix 12
AB3
A
221 231Right-handed alpha
Helix 13
AB4
A
246 251Right-handed alpha
Helix 14
AB5
A
251 264Right-handed alpha
Helix 15
AB6
B
34 39Right-handed 310
Helix 16
AB7
B
41 45Right-handed 310
Helix 17
AB8
B
70 86Right-handed alpha
Helix 18
AB9
B
96 109Right-handed alpha
Helix 19
AC1
B
127 143Right-handed alpha
Helix 20
AC2
B
145 157Right-handed alpha
Helix 21
AC3
B
159 163Right-handed 310
Helix 22
AC4
B
166 179Right-handed alpha
Helix 23
AC5
B
181 195Right-handed alpha
Helix 24
AC6
B
198 205Right-handed alpha
Helix 25
AC7
B
221 231Right-handed alpha
Helix 26
AC8
B
246 251Right-handed alpha
Helix 27
AC9
B
251 264Right-handed alpha
Helix 28
AD1
C
34 39Right-handed 310
Helix 29
AD2
C
41 45Right-handed 310
Helix 30
AD3
C
70 86Right-handed alpha
Helix 31
AD4
C
96 109Right-handed alpha
Helix 32
AD5
C
127 143Right-handed alpha
Helix 33
AD6
C
145 149Right-handed 310
Helix 34
AD7
C
159 163Right-handed 310
Helix 35
AD8
C
166 179Right-handed alpha
Helix 36
AD9
C
181 195Right-handed alpha
Helix 37
AE1
C
198 205Right-handed alpha
Helix 38
AE2
C
221 231Right-handed alpha
Helix 39
AE3
C
246 251Right-handed alpha
Helix 40
AE4
C
251 264Right-handed alpha
Helix 41
AE5
D
34 39Right-handed 310
Helix 42
AE6
D
41 45Right-handed 310
Helix 43
AE7
D
70 86Right-handed alpha
Helix 44
AE8
D
96 109Right-handed alpha
Helix 45
AE9
D
127 143Right-handed alpha
Helix 46
AF1
D
145 147Right-handed 310
Helix 47
AF2
D
148 153Right-handed alpha
Helix 48
AF3
D
159 163Right-handed 310
Helix 49
AF4
D
166 179Right-handed alpha
Helix 50
AF5
D
181 195Right-handed alpha
Helix 51
AF6
D
198 205Right-handed alpha
Helix 52
AF7
D
221 231Right-handed alpha
Helix 53
AF8
D
246 251Right-handed alpha
Helix 54
AF9
D
251 264Right-handed alpha
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There are 4 sheets in PDB entry 7DQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
50 54anti-parallel
Strand 4
A
24 28parallel
Strand 5
A
90 95parallel
Strand 6
A
113 119parallel
Strand 7
A
209 214parallel
Strand 8
A
236 240parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
11 17anti-parallel
Strand 3
B
50 54anti-parallel
Strand 4
B
24 28parallel
Strand 5
B
90 95parallel
Strand 6
B
113 119parallel
Strand 7
B
209 214parallel
Strand 8
B
236 240parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 8first strand
Strand 2
C
11 17anti-parallel
Strand 3
C
50 54anti-parallel
Strand 4
C
24 28parallel
Strand 5
C
90 95parallel
Strand 6
C
113 119parallel
Strand 7
C
209 214parallel
Strand 8
C
236 240parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 8first strand
Strand 2
D
11 17anti-parallel
Strand 3
D
50 54anti-parallel
Strand 4
D
24 28parallel
Strand 5
D
90 95parallel
Strand 6
D
113 119parallel
Strand 7
D
209 214parallel
Strand 8
D
236 240parallel
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