Analysis of interatomic Contacts of Structural Units in PDB entry:
7DQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DQB entry

There are 2 chains in PDB entry 7DQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 9SER 248
B
 SER 9SER 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7DQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
29 37Right-handed alpha
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
79 100Right-handed alpha
Helix 6
AA6
A
140 148Right-handed alpha
Helix 7
AA7
A
151 161Right-handed alpha
Helix 8
AA8
A
173 188Right-handed alpha
Helix 9
AA9
A
227 248Right-handed alpha
Helix 10
AB1
B
10 19Right-handed alpha
Helix 11
AB2
B
29 37Right-handed alpha
Helix 12
AB3
B
40 54Right-handed alpha
Helix 13
AB4
B
68 77Right-handed alpha
Helix 14
AB5
B
79 100Right-handed alpha
Helix 15
AB6
B
140 148Right-handed alpha
Helix 16
AB7
B
151 160Right-handed alpha
Helix 17
AB8
B
173 188Right-handed alpha
Helix 18
AB9
B
227 247Right-handed alpha
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There are 4 sheets in PDB entry 7DQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 28first strand
Strand 2
A
65 67anti-parallel
Strand 3
A
57 59anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
112 120anti-parallel
Strand 3
A
102 109anti-parallel
Strand 4
A
212 222anti-parallel
Strand 5
A
200 209anti-parallel
Strand 6
A
190 193anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
65 67anti-parallel
Strand 3
B
57 59anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
112 120anti-parallel
Strand 3
B
102 109anti-parallel
Strand 4
B
212 222anti-parallel
Strand 5
B
200 209anti-parallel
Strand 6
B
190 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il