Analysis of interatomic Contacts of Structural Units in PDB entry:
7DR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DR1 entry

There are 10 chains in PDB entry 7DR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	GLY 752
B	GLY 2	PHE 736
C	ALA 2	TYR 81
D	THR 78	SER 216
E	MET 1	GLU 62
F	ASP 26	ARG 186
I	ASN 4	GLU 33
J	PHE 3	PRO 39
L	ILE 15	ILE 145
M	LEU 2	LYS 30

There are 86 helices in PDB entry 7DR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	55	Right-handed alpha
Helix 2	AA2	A	65	97	Right-handed alpha
Helix 3	AA3	A	100	107	Right-handed alpha
Helix 4	AA4	A	123	127	Right-handed 310
Helix 5	AA5	A	143	152	Right-handed alpha
Helix 6	AA6	A	155	183	Right-handed alpha
Helix 7	AA7	A	187	192	Right-handed alpha
Helix 8	AA8	A	193	204	Right-handed alpha
Helix 9	AA9	A	206	220	Right-handed alpha
Helix 10	AB1	A	220	231	Right-handed alpha
Helix 11	AB2	A	241	246	Right-handed alpha
Helix 12	AB3	A	246	251	Right-handed alpha
Helix 13	AB4	A	261	266	Right-handed alpha
Helix 14	AB5	A	268	273	Right-handed 310
Helix 15	AB6	A	290	309	Right-handed alpha
Helix 16	AB7	A	322	327	Right-handed alpha
Helix 17	AB8	A	340	346	Right-handed alpha
Helix 18	AB9	A	348	373	Right-handed alpha
Helix 19	AC1	A	383	416	Right-handed alpha
Helix 20	AC2	A	425	432	Right-handed alpha
Helix 21	AC3	A	433	465	Right-handed alpha
Helix 22	AC4	A	481	491	Right-handed alpha
Helix 23	AC5	A	529	556	Right-handed alpha
Helix 24	AC6	A	587	618	Right-handed alpha
Helix 25	AC7	A	635	640	Right-handed alpha
Helix 26	AC8	A	642	649	Right-handed alpha
Helix 27	AC9	A	655	660	Right-handed alpha
Helix 28	AD1	A	666	688	Right-handed alpha
Helix 29	AD2	A	690	708	Right-handed alpha
Helix 30	AD3	A	720	752	Right-handed alpha
Helix 31	AD4	B	9	14	Right-handed alpha
Helix 32	AD5	B	18	27	Right-handed alpha
Helix 33	AD6	B	30	34	Right-handed 310
Helix 34	AD7	B	38	72	Right-handed alpha
Helix 35	AD8	B	73	80	Right-handed alpha
Helix 36	AD9	B	97	105	Right-handed alpha
Helix 37	AE1	B	119	127	Right-handed alpha
Helix 38	AE2	B	131	156	Right-handed alpha
Helix 39	AE3	B	157	162	Right-handed 310
Helix 40	AE4	B	164	169	Right-handed alpha
Helix 41	AE5	B	170	181	Right-handed alpha
Helix 42	AE6	B	183	197	Right-handed alpha
Helix 43	AE7	B	197	203	Right-handed alpha
Helix 44	AE8	B	222	227	Right-handed alpha
Helix 45	AE9	B	229	235	Right-handed 310
Helix 46	AF1	B	269	288	Right-handed alpha
Helix 47	AF2	B	322	329	Right-handed alpha
Helix 48	AF3	B	329	355	Right-handed alpha
Helix 49	AF4	B	364	397	Right-handed alpha
Helix 50	AF5	B	406	412	Right-handed alpha
Helix 51	AF6	B	414	446	Right-handed alpha
Helix 52	AF7	B	448	452	Right-handed 310
Helix 53	AF8	B	457	467	Right-handed alpha
Helix 54	AF9	B	483	488	Right-handed alpha
Helix 55	AG1	B	496	506	Right-handed alpha
Helix 56	AG2	B	516	543	Right-handed alpha
Helix 57	AG3	B	552	557	Right-handed 310
Helix 58	AG4	B	574	607	Right-handed alpha
Helix 59	AG5	B	609	616	Right-handed alpha
Helix 60	AG6	B	618	625	Right-handed alpha
Helix 61	AG7	B	626	631	Right-handed alpha
Helix 62	AG8	B	632	636	Right-handed 310
Helix 63	AG9	B	646	669	Right-handed alpha
Helix 64	AH1	B	670	687	Right-handed alpha
Helix 65	AH2	B	704	736	Right-handed alpha
Helix 66	AH3	C	44	48	Right-handed 310
Helix 67	AH4	C	54	58	Right-handed 310
Helix 68	AH5	D	97	102	Right-handed alpha
Helix 69	AH6	D	138	152	Right-handed alpha
Helix 70	AH7	E	54	58	Right-handed 310
Helix 71	AH8	F	36	52	Right-handed alpha
Helix 72	AH9	F	61	84	Right-handed alpha
Helix 73	AI1	F	104	135	Right-handed alpha
Helix 74	AI2	F	140	145	Right-handed alpha
Helix 75	AI3	F	147	159	Right-handed alpha
Helix 76	AI4	F	160	171	Right-handed alpha
Helix 77	AI5	I	5	10	Right-handed alpha
Helix 78	AI6	I	15	30	Right-handed alpha
Helix 79	AI7	J	5	8	Right-handed 310
Helix 80	AI8	J	9	32	Right-handed alpha
Helix 81	AI9	L	25	33	Right-handed alpha
Helix 82	AJ1	L	43	66	Right-handed alpha
Helix 83	AJ2	L	74	102	Right-handed alpha
Helix 84	AJ3	L	119	144	Right-handed alpha
Helix 85	AJ4	M	3	14	Right-handed alpha
Helix 86	AJ5	M	14	30	Right-handed alpha

There are 11 sheets in PDB entry 7DR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	129	132	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	628	630	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	F	94	96	parallel
Strand 3	F	87	88	anti-parallel
Strand 4	F	31	32	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	639	first strand
Strand 2	B	642	643	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	105	109	anti-parallel
Strand 3	D	159	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	50	53	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DR1