Analysis of interatomic Contacts of Structural Units in PDB entry:
7DRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DRD entry

There are 8 chains in PDB entry 7DRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	VAL 323
B	ALA 4	VAL 140
C	SER 2	VAL 323
D	ALA 4	VAL 140
E	SER 2	VAL 323
F	ALA 4	VAL 140
G	SER 2	ASP 324
H	ALA 4	VAL 140

There are 64 helices in PDB entry 7DRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	23	34	Right-handed alpha
Helix 3	AA3	A	43	47	Right-handed alpha
Helix 4	AA4	A	54	69	Right-handed alpha
Helix 5	AA5	A	90	109	Right-handed alpha
Helix 6	AA6	A	116	119	Right-handed 310
Helix 7	AA7	A	120	126	Right-handed alpha
Helix 8	AA8	A	127	135	Right-handed alpha
Helix 9	AA9	A	150	164	Right-handed alpha
Helix 10	AB1	A	174	178	Right-handed 310
Helix 11	AB2	A	245	256	Right-handed alpha
Helix 12	AB3	A	257	259	Right-handed 310
Helix 13	AB4	A	279	289	Right-handed alpha
Helix 14	AB5	A	307	323	Right-handed alpha
Helix 15	AB6	B	60	62	Right-handed 310
Helix 16	AB7	B	77	81	Right-handed 310
Helix 17	AB8	C	13	18	Right-handed alpha
Helix 18	AB9	C	23	34	Right-handed alpha
Helix 19	AC1	C	43	47	Right-handed alpha
Helix 20	AC2	C	54	69	Right-handed alpha
Helix 21	AC3	C	90	109	Right-handed alpha
Helix 22	AC4	C	116	119	Right-handed 310
Helix 23	AC5	C	120	126	Right-handed alpha
Helix 24	AC6	C	127	135	Right-handed alpha
Helix 25	AC7	C	150	164	Right-handed alpha
Helix 26	AC8	C	174	178	Right-handed 310
Helix 27	AC9	C	245	256	Right-handed alpha
Helix 28	AD1	C	257	259	Right-handed 310
Helix 29	AD2	C	279	289	Right-handed alpha
Helix 30	AD3	C	307	323	Right-handed alpha
Helix 31	AD4	D	60	62	Right-handed 310
Helix 32	AD5	D	77	81	Right-handed 310
Helix 33	AD6	E	13	18	Right-handed alpha
Helix 34	AD7	E	23	34	Right-handed alpha
Helix 35	AD8	E	43	47	Right-handed alpha
Helix 36	AD9	E	54	69	Right-handed alpha
Helix 37	AE1	E	90	109	Right-handed alpha
Helix 38	AE2	E	116	119	Right-handed 310
Helix 39	AE3	E	120	126	Right-handed alpha
Helix 40	AE4	E	127	135	Right-handed alpha
Helix 41	AE5	E	150	164	Right-handed alpha
Helix 42	AE6	E	174	178	Right-handed 310
Helix 43	AE7	E	245	256	Right-handed alpha
Helix 44	AE8	E	257	259	Right-handed 310
Helix 45	AE9	E	279	289	Right-handed alpha
Helix 46	AF1	E	307	323	Right-handed alpha
Helix 47	AF2	F	60	62	Right-handed 310
Helix 48	AF3	F	77	81	Right-handed 310
Helix 49	AF4	G	13	18	Right-handed alpha
Helix 50	AF5	G	23	34	Right-handed alpha
Helix 51	AF6	G	43	47	Right-handed alpha
Helix 52	AF7	G	54	69	Right-handed alpha
Helix 53	AF8	G	90	109	Right-handed alpha
Helix 54	AF9	G	116	119	Right-handed 310
Helix 55	AG1	G	120	125	Right-handed alpha
Helix 56	AG2	G	127	135	Right-handed alpha
Helix 57	AG3	G	150	164	Right-handed alpha
Helix 58	AG4	G	174	178	Right-handed 310
Helix 59	AG5	G	245	256	Right-handed alpha
Helix 60	AG6	G	257	259	Right-handed 310
Helix 61	AG7	G	279	289	Right-handed alpha
Helix 62	AG8	G	307	324	Right-handed alpha
Helix 63	AG9	H	60	62	Right-handed 310
Helix 64	AH1	H	77	81	Right-handed 310

There are 20 sheets in PDB entry 7DRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	137	142	parallel
Strand 3	A	112	115	parallel
Strand 4	A	71	76	parallel
Strand 5	A	38	42	parallel
Strand 6	A	5	9	parallel
Strand 7	A	295	300	parallel
Strand 8	A	262	266	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	23	first strand
Strand 2	B	26	34	anti-parallel
Strand 3	B	92	97	anti-parallel
Strand 4	B	64	68	anti-parallel
Strand 5	B	71	74	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	85	86	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	47	54	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	127	131	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	47	54	anti-parallel
Strand 3	B	107	121	anti-parallel
Strand 4	B	134	138	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	172	first strand
Strand 2	C	137	142	parallel
Strand 3	C	112	115	parallel
Strand 4	C	71	76	parallel
Strand 5	C	38	42	parallel
Strand 6	C	3	9	parallel
Strand 7	C	293	300	parallel
Strand 8	C	262	266	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	23	first strand
Strand 2	D	26	34	anti-parallel
Strand 3	D	92	97	anti-parallel
Strand 4	D	64	68	anti-parallel
Strand 5	D	71	74	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	43	first strand
Strand 2	D	85	86	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	47	54	anti-parallel
Strand 3	D	107	121	anti-parallel
Strand 4	D	127	131	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	58	first strand
Strand 2	D	47	54	anti-parallel
Strand 3	D	107	121	anti-parallel
Strand 4	D	134	138	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	172	first strand
Strand 2	E	137	142	parallel
Strand 3	E	112	115	parallel
Strand 4	E	71	76	parallel
Strand 5	E	38	42	parallel
Strand 6	E	4	9	parallel
Strand 7	E	294	300	parallel
Strand 8	E	262	266	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	23	first strand
Strand 2	F	26	34	anti-parallel
Strand 3	F	92	97	anti-parallel
Strand 4	F	64	68	anti-parallel
Strand 5	F	71	74	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	43	first strand
Strand 2	F	85	86	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	47	54	anti-parallel
Strand 3	F	107	121	anti-parallel
Strand 4	F	127	131	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	58	first strand
Strand 2	F	47	54	anti-parallel
Strand 3	F	107	121	anti-parallel
Strand 4	F	134	138	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	172	first strand
Strand 2	G	137	142	parallel
Strand 3	G	112	115	parallel
Strand 4	G	71	76	parallel
Strand 5	G	38	42	parallel
Strand 6	G	3	9	parallel
Strand 7	G	293	300	parallel
Strand 8	G	262	266	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	23	first strand
Strand 2	H	26	34	anti-parallel
Strand 3	H	92	97	anti-parallel
Strand 4	H	64	68	anti-parallel
Strand 5	H	71	74	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	43	first strand
Strand 2	H	85	86	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	58	first strand
Strand 2	H	47	54	anti-parallel
Strand 3	H	107	121	anti-parallel
Strand 4	H	127	131	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	58	first strand
Strand 2	H	47	54	anti-parallel
Strand 3	H	107	121	anti-parallel
Strand 4	H	134	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DRD