Analysis of interatomic Contacts of Structural Units in PDB entry:
7DRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DRP entry

There are 8 chains in PDB entry 7DRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	ARG 314
B	ASN 3	LYS 313
C	ASN 3	LYS 313
D	SER -1	LYS 313
F	LEU 1	GLY 23
F	GLU 25	GLU 25
E	LEU 1	GLY 23
E	GLU 25	GLU 25

There are 55 helices in PDB entry 7DRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	29	Right-handed alpha
Helix 2	AA2	A	37	39	Right-handed 310
Helix 3	AA3	A	40	45	Right-handed alpha
Helix 4	AA4	A	85	118	Right-handed alpha
Helix 5	AA5	A	124	126	Right-handed 310
Helix 6	AA6	A	127	132	Right-handed alpha
Helix 7	AA7	A	132	143	Right-handed alpha
Helix 8	AA8	A	155	167	Right-handed alpha
Helix 9	AA9	A	185	188	Right-handed 310
Helix 10	AB1	A	189	194	Right-handed alpha
Helix 11	AB2	A	195	198	Right-handed 310
Helix 12	AB3	A	247	262	Right-handed alpha
Helix 13	AB4	A	289	297	Right-handed alpha
Helix 14	AB5	A	300	314	Right-handed alpha
Helix 15	AB6	B	16	28	Right-handed alpha
Helix 16	AB7	B	37	39	Right-handed 310
Helix 17	AB8	B	40	45	Right-handed alpha
Helix 18	AB9	B	85	92	Right-handed alpha
Helix 19	AC1	B	92	118	Right-handed alpha
Helix 20	AC2	B	124	126	Right-handed 310
Helix 21	AC3	B	127	132	Right-handed alpha
Helix 22	AC4	B	132	142	Right-handed alpha
Helix 23	AC5	B	155	167	Right-handed alpha
Helix 24	AC6	B	189	194	Right-handed alpha
Helix 25	AC7	B	195	197	Right-handed 310
Helix 26	AC8	B	247	262	Right-handed alpha
Helix 27	AC9	B	289	297	Right-handed alpha
Helix 28	AD1	B	300	312	Right-handed alpha
Helix 29	AD2	C	16	28	Right-handed alpha
Helix 30	AD3	C	37	39	Right-handed 310
Helix 31	AD4	C	40	45	Right-handed alpha
Helix 32	AD5	C	85	92	Right-handed alpha
Helix 33	AD6	C	92	117	Right-handed alpha
Helix 34	AD7	C	124	126	Right-handed 310
Helix 35	AD8	C	127	132	Right-handed alpha
Helix 36	AD9	C	132	142	Right-handed alpha
Helix 37	AE1	C	155	167	Right-handed alpha
Helix 38	AE2	C	184	188	Right-handed 310
Helix 39	AE3	C	189	194	Right-handed alpha
Helix 40	AE4	C	195	199	Right-handed 310
Helix 41	AE5	C	247	262	Right-handed alpha
Helix 42	AE6	C	289	297	Right-handed alpha
Helix 43	AE7	C	300	312	Right-handed alpha
Helix 44	AE8	D	16	29	Right-handed alpha
Helix 45	AE9	D	37	41	Right-handed 310
Helix 46	AF1	D	85	118	Right-handed alpha
Helix 47	AF2	D	124	126	Right-handed 310
Helix 48	AF3	D	127	132	Right-handed alpha
Helix 49	AF4	D	132	143	Right-handed alpha
Helix 50	AF5	D	155	167	Right-handed alpha
Helix 51	AF6	D	189	194	Right-handed alpha
Helix 52	AF7	D	195	198	Right-handed 310
Helix 53	AF8	D	247	262	Right-handed alpha
Helix 54	AF9	D	289	297	Right-handed alpha
Helix 55	AG1	D	300	312	Right-handed alpha

There are 12 sheets in PDB entry 7DRP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	8	11	parallel
Strand 3	A	68	71	parallel
Strand 4	A	120	122	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	56	58	anti-parallel
Strand 3	A	47	50	anti-parallel
Strand 4	B	150	153	anti-parallel
Strand 5	B	201	205	anti-parallel
Strand 6	B	169	173	anti-parallel
Strand 7	B	181	182	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	169	172	anti-parallel
Strand 3	A	201	205	anti-parallel
Strand 4	A	150	153	anti-parallel
Strand 5	B	47	50	anti-parallel
Strand 6	B	56	58	anti-parallel
Strand 7	B	61	62	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	244	first strand
Strand 2	A	220	229	anti-parallel
Strand 3	A	211	217	anti-parallel
Strand 4	A	265	272	anti-parallel
Strand 5	A	278	284	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	8	11	parallel
Strand 3	B	68	71	parallel
Strand 4	B	120	122	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	243	first strand
Strand 2	B	221	227	anti-parallel
Strand 3	B	211	217	anti-parallel
Strand 4	B	265	272	anti-parallel
Strand 5	B	278	284	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	8	11	parallel
Strand 3	C	68	71	parallel
Strand 4	C	120	122	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	56	58	anti-parallel
Strand 3	C	47	50	anti-parallel
Strand 4	D	150	153	anti-parallel
Strand 5	D	201	205	anti-parallel
Strand 6	D	169	173	anti-parallel
Strand 7	D	181	182	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	181	182	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	201	205	anti-parallel
Strand 4	C	150	153	anti-parallel
Strand 5	D	47	50	anti-parallel
Strand 6	D	56	58	anti-parallel
Strand 7	D	61	62	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	244	first strand
Strand 2	C	221	230	anti-parallel
Strand 3	C	211	217	anti-parallel
Strand 4	C	265	272	anti-parallel
Strand 5	C	278	283	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	8	11	parallel
Strand 3	D	68	71	parallel
Strand 4	D	120	122	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	220	226	anti-parallel
Strand 3	D	211	217	anti-parallel
Strand 4	D	265	272	anti-parallel
Strand 5	D	278	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DRP