Analysis of interatomic Contacts of Structural Units in PDB entry:
7DRT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DRT entry

There are 2 chains in PDB entry 7DRT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19LYS 352
B
 GLY 3ASN 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7DRT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed 310
Helix 2
AA2
A
49 59Right-handed alpha
Helix 3
AA3
A
62 81Right-handed alpha
Helix 4
AA4
A
99 104Right-handed 310
Helix 5
AA5
A
106 130Right-handed alpha
Helix 6
AA6
A
160 170Right-handed alpha
Helix 7
AA7
A
171 173Right-handed 310
Helix 8
AA8
A
178 198Right-handed alpha
Helix 9
AA9
A
223 238Right-handed alpha
Helix 10
AB1
A
306 311Right-handed alpha
Helix 11
AB2
B
4 8Right-handed 310
Helix 12
AB3
B
10 35Right-handed alpha
Helix 13
AB4
B
76 81Right-handed 310
Helix 14
AB5
B
204 208Right-handed 310
Helix 15
AB6
B
227 258Right-handed alpha
Helix 16
AB7
B
264 282Right-handed alpha
Helix 17
AB8
B
283 288Right-handed 310
Helix 18
AB9
B
295 322Right-handed alpha
Helix 19
AC1
B
331 334Right-handed 310
Helix 20
AC2
B
335 363Right-handed alpha
Helix 21
AC3
B
371 411Right-handed alpha
Helix 22
AC4
B
418 455Right-handed alpha
Helix 23
AC5
B
469 492Right-handed alpha
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There are 7 sheets in PDB entry 7DRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 206first strand
Strand 2
A
214 220anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
253 258first strand
Strand 2
A
239 246anti-parallel
Strand 3
A
272 273parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 327first strand
Strand 2
A
340 348anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
215 226anti-parallel
Strand 3
B
110 119anti-parallel
Strand 4
B
182 187anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 74first strand
Strand 2
B
48 51anti-parallel
Strand 3
B
90 95anti-parallel
Strand 4
B
194 200anti-parallel
Strand 5
B
131 141anti-parallel
Strand 6
B
149 159anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
178 179anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
459 462first strand
Strand 2
B
465 468anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il