Analysis of interatomic Contacts of Structural Units in PDB entry:
7DS3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DS3 entry

There are 3 chains in PDB entry 7DS3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 7SER 276
B
 ASP 3ARG 244
C
 ALA 322ARG 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 7DS3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
42 50Right-handed alpha
Helix 4
AA4
A
50 62Right-handed alpha
Helix 5
AA5
A
77 79Right-handed 310
Helix 6
AA6
A
117 136Right-handed alpha
Helix 7
AA7
A
220 251Right-handed alpha
Helix 8
AA8
A
253 259Right-handed alpha
Helix 9
AA9
A
270 276Right-handed alpha
Helix 10
AB1
B
4 16Right-handed alpha
Helix 11
AB2
B
17 19Right-handed 310
Helix 12
AB3
B
20 32Right-handed alpha
Helix 13
AB4
B
35 43Right-handed alpha
Helix 14
AB5
B
90 113Right-handed alpha
Helix 15
AB6
B
208 231Right-handed alpha
Helix 16
AB7
B
231 244Right-handed alpha
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There are 5 sheets in PDB entry 7DS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
74 75anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
94 99anti-parallel
Strand 4
A
104 110anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 148first strand
Strand 2
A
151 164anti-parallel
Strand 3
A
169 182anti-parallel
Strand 4
A
185 198anti-parallel
Strand 5
A
203 217anti-parallel
Strand 6
B
185 201anti-parallel
Strand 7
B
165 181anti-parallel
Strand 8
B
145 157anti-parallel
Strand 9
B
127 137anti-parallel
Strand 10
B
116 124anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
57 61anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 67first strand
Strand 2
B
70 72anti-parallel
Strand 3
B
79 80anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il