Analysis of interatomic Contacts of Structural Units in PDB entry:
7DSH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DSH entry

There are 2 chains in PDB entry 7DSH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 187VAL 1437
B
 ASN 50TRP 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 49 helices in PDB entry 7DSH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
205 215Right-handed alpha
Helix 2
AA2
A
220 229Right-handed alpha
Helix 3
AA3
A
239 243Right-handed 310
Helix 4
AA4
A
244 268Right-handed alpha
Helix 5
AA5
A
461 465Right-handed 310
Helix 6
AA6
A
549 571Right-handed alpha
Helix 7
AA7
A
573 577Right-handed 310
Helix 8
AA8
A
599 609Right-handed alpha
Helix 9
AA9
A
619 634Right-handed alpha
Helix 10
AB1
A
651 655Right-handed 310
Helix 11
AB2
A
656 659Right-handed 310
Helix 12
AB3
A
696 700Right-handed 310
Helix 13
AB4
A
708 726Right-handed alpha
Helix 14
AB5
A
761 775Right-handed alpha
Helix 15
AB6
A
798 812Right-handed alpha
Helix 16
AB7
A
892 903Right-handed alpha
Helix 17
AB8
A
922 936Right-handed alpha
Helix 18
AB9
A
946 951Right-handed alpha
Helix 19
AC1
A
971 977Right-handed alpha
Helix 20
AC2
A
992 1001Right-handed alpha
Helix 21
AC3
A
1034 1044Right-handed alpha
Helix 22
AC4
A
1074 1079Right-handed alpha
Helix 23
AC5
A
1087 1092Right-handed alpha
Helix 24
AC6
A
1107 1120Right-handed alpha
Helix 25
AC7
A
1134 1139Right-handed alpha
Helix 26
AC8
A
1165 1167Right-handed 310
Helix 27
AC9
A
1168 1175Right-handed alpha
Helix 28
AD1
A
1178 1183Right-handed alpha
Helix 29
AD2
A
1183 1197Right-handed alpha
Helix 30
AD3
A
1231 1239Right-handed alpha
Helix 31
AD4
A
1247 1252Right-handed alpha
Helix 32
AD5
A
1253 1255Right-handed 310
Helix 33
AD6
A
1256 1261Right-handed alpha
Helix 34
AD7
A
1266 1293Right-handed alpha
Helix 35
AD8
A
1311 1329Right-handed alpha
Helix 36
AD9
A
1339 1347Right-handed alpha
Helix 37
AE1
A
1348 1356Right-handed alpha
Helix 38
AE2
A
1367 1374Right-handed alpha
Helix 39
AE3
A
1375 1386Right-handed alpha
Helix 40
AE4
A
1386 1404Right-handed alpha
Helix 41
AE5
A
1406 1416Right-handed alpha
Helix 42
AE6
B
74 86Right-handed alpha
Helix 43
AE7
B
88 98Right-handed alpha
Helix 44
AE8
B
186 191Right-handed alpha
Helix 45
AE9
B
194 199Right-handed alpha
Helix 46
AF1
B
232 237Right-handed alpha
Helix 47
AF2
B
266 270Right-handed 310
Helix 48
AF3
B
308 313Right-handed alpha
Helix 49
AF4
B
372 395Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 7DSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
518 521anti-parallel
Strand 3
A
420 421anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
430 434anti-parallel
Strand 3
A
511 513anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
485 488first strand
Strand 2
A
495 498anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1099 1100first strand
Strand 2
A
984 986parallel
Strand 3
A
661 664parallel
Strand 4
A
1124 1125parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
687 689first strand
Strand 2
A
682 684anti-parallel
Strand 3
A
956 963anti-parallel
Strand 4
A
909 915anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
781 783first strand
Strand 2
A
793 795anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
813 818first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
830 834anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
839 840first strand
Strand 2
A
848 851anti-parallel
Strand 3
A
869 872anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
102 106anti-parallel
Strand 3
B
358 362anti-parallel
Strand 4
B
173 178anti-parallel
Strand 5
B
324 330anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 144first strand
Strand 2
B
158 165anti-parallel
Strand 3
B
338 345anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 228first strand
Strand 2
B
283 284parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
257 258anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il