Analysis of interatomic Contacts of Structural Units in PDB entry:
7DSL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DSL entry

There are 2 chains in PDB entry 7DSL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 161ALA 631
B
VAL 44THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 7DSL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
178 206Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
231 236Right-handed alpha
Helix 5
AA5
A
243 247Right-handed 310
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
287 300Right-handed alpha
Helix 8
AA8
A
323 342Right-handed alpha
Helix 9
AA9
A
350 354Right-handed 310
Helix 10
AB1
A
356 370Right-handed alpha
Helix 11
AB2
A
385 393Right-handed alpha
Helix 12
AB3
A
412 428Right-handed alpha
Helix 13
AB4
A
441 445Right-handed 310
Helix 14
AB5
A
450 459Right-handed alpha
Helix 15
AB6
A
509 514Right-handed alpha
Helix 16
AB7
A
519 532Right-handed alpha
Helix 17
AB8
A
534 539Right-handed alpha
Helix 18
AB9
A
585 589Right-handed 310
Helix 19
AC1
B
51 64Right-handed alpha
Helix 20
AC2
B
66 71Right-handed alpha
Helix 21
AC3
B
71 80Right-handed alpha
Helix 22
AC4
B
81 110Right-handed alpha
Helix 23
AC5
B
117 124Right-handed alpha
Helix 24
AC6
B
125 139Right-handed alpha
Helix 25
AC7
B
140 158Right-handed alpha
Helix 26
AC8
B
159 161Right-handed 310
Helix 27
AC9
B
167 189Right-handed alpha
Helix 28
AD1
B
189 221Right-handed alpha
Helix 29
AD2
B
239 253Right-handed alpha
Helix 30
AD3
B
272 298Right-handed alpha
Helix 31
AD4
B
301 308Right-handed alpha
Helix 32
AD5
B
310 320Right-handed alpha
Helix 33
AD6
B
325 356Right-handed alpha
Helix 34
AD7
B
373 386Right-handed alpha
Helix 35
AD8
B
387 390Right-handed 310
Helix 36
AD9
B
400 421Right-handed alpha
Helix 37
AE1
B
434 454Right-handed alpha
Helix 38
AE2
B
454 467Right-handed alpha
Helix 39
AE3
B
468 477Right-handed alpha
Helix 40
AE4
B
482 501Right-handed alpha
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There are 6 sheets in PDB entry 7DSL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
400 402first strand
Strand 2
A
376 380parallel
Strand 3
A
345 348parallel
Strand 4
A
306 308parallel
Strand 5
A
261 262parallel
Strand 6
A
225 228parallel
Strand 7
A
463 468parallel
Strand 8
A
432 434parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
266 268first strand
Strand 2
A
276 281anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
541 545first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
365 366first strand
Strand 2
B
503 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il