Analysis of interatomic Contacts of Structural Units in PDB entry:
7DSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DSQ entry

There are 2 chains in PDB entry 7DSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 162ALA 631
B
 VAL 44THR 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 7DSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
166 174Right-handed alpha
Helix 2
AA2
A
179 207Right-handed alpha
Helix 3
AA3
A
218 222Right-handed 310
Helix 4
AA4
A
231 236Right-handed alpha
Helix 5
AA5
A
241 247Right-handed alpha
Helix 6
AA6
A
248 256Right-handed alpha
Helix 7
AA7
A
272 274Right-handed 310
Helix 8
AA8
A
287 301Right-handed alpha
Helix 9
AA9
A
324 342Right-handed alpha
Helix 10
AB1
A
351 354Right-handed 310
Helix 11
AB2
A
356 370Right-handed alpha
Helix 12
AB3
A
385 393Right-handed alpha
Helix 13
AB4
A
413 428Right-handed alpha
Helix 14
AB5
A
441 445Right-handed 310
Helix 15
AB6
A
447 449Right-handed 310
Helix 16
AB7
A
450 459Right-handed alpha
Helix 17
AB8
A
509 514Right-handed alpha
Helix 18
AB9
A
520 532Right-handed alpha
Helix 19
AC1
A
534 540Right-handed alpha
Helix 20
AC2
B
52 64Right-handed alpha
Helix 21
AC3
B
71 78Right-handed alpha
Helix 22
AC4
B
81 110Right-handed alpha
Helix 23
AC5
B
117 125Right-handed alpha
Helix 24
AC6
B
126 139Right-handed alpha
Helix 25
AC7
B
140 145Right-handed alpha
Helix 26
AC8
B
145 157Right-handed alpha
Helix 27
AC9
B
158 161Right-handed 310
Helix 28
AD1
B
167 189Right-handed alpha
Helix 29
AD2
B
190 219Right-handed alpha
Helix 30
AD3
B
242 253Right-handed alpha
Helix 31
AD4
B
269 297Right-handed alpha
Helix 32
AD5
B
301 307Right-handed alpha
Helix 33
AD6
B
310 320Right-handed alpha
Helix 34
AD7
B
325 356Right-handed alpha
Helix 35
AD8
B
373 386Right-handed alpha
Helix 36
AD9
B
387 389Right-handed 310
Helix 37
AE1
B
393 395Right-handed 310
Helix 38
AE2
B
396 422Right-handed alpha
Helix 39
AE3
B
434 452Right-handed alpha
Helix 40
AE4
B
454 467Right-handed alpha
Helix 41
AE5
B
468 476Right-handed alpha
Helix 42
AE6
B
482 501Right-handed alpha
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There are 6 sheets in PDB entry 7DSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
463 468parallel
Strand 3
A
432 434parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 262first strand
Strand 2
A
304 308parallel
Strand 3
A
346 349parallel
Strand 4
A
377 380parallel
Strand 5
A
400 402parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 268first strand
Strand 2
A
276 281anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
541 545first strand
Strand 2
A
551 557anti-parallel
Strand 3
A
563 569anti-parallel
Strand 4
A
622 627anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 576first strand
Strand 2
A
616 617anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 594first strand
Strand 2
A
610 611anti-parallel
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