Analysis of interatomic Contacts of Structural Units in PDB entry:
7DSU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DSU entry

There are 2 chains in PDB entry 7DSU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LYS 552
B
 ALA 12LYS 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 7DSU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 16Right-handed alpha
Helix 2
AA2
A
22 32Right-handed alpha
Helix 3
AA3
A
48 52Right-handed alpha
Helix 4
AA4
A
97 111Right-handed alpha
Helix 5
AA5
A
159 174Right-handed alpha
Helix 6
AA6
A
189 202Right-handed alpha
Helix 7
AA7
A
247 254Right-handed alpha
Helix 8
AA8
A
380 393Right-handed alpha
Helix 9
AA9
A
402 411Right-handed alpha
Helix 10
AB1
A
428 442Right-handed alpha
Helix 11
AB2
A
456 461Right-handed alpha
Helix 12
AB3
A
461 472Right-handed alpha
Helix 13
AB4
A
481 487Right-handed alpha
Helix 14
AB5
A
509 527Right-handed alpha
Helix 15
AB6
A
536 545Right-handed alpha
Helix 16
AB7
B
13 19Right-handed alpha
Helix 17
AB8
B
22 36Right-handed alpha
Helix 18
AB9
B
43 55Right-handed alpha
Helix 19
AC1
B
97 112Right-handed alpha
Helix 20
AC2
B
127 135Right-handed alpha
Helix 21
AC3
B
156 174Right-handed alpha
Helix 22
AC4
B
189 202Right-handed alpha
Helix 23
AC5
B
247 254Right-handed alpha
Helix 24
AC6
B
376 379Right-handed 310
Helix 25
AC7
B
380 393Right-handed alpha
Helix 26
AC8
B
402 412Right-handed alpha
Helix 27
AC9
B
428 442Right-handed alpha
Helix 28
AD1
B
453 455Right-handed 310
Helix 29
AD2
B
456 472Right-handed alpha
Helix 30
AD3
B
481 487Right-handed alpha
Helix 31
AD4
B
503 508Right-handed alpha
Helix 32
AD5
B
514 527Right-handed alpha
Helix 33
AD6
B
537 544Right-handed alpha
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There are 7 sheets in PDB entry 7DSU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
B
58 59anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 76first strand
Strand 2
A
495 503anti-parallel
Strand 3
A
92 95parallel
Strand 4
A
446 451parallel
Strand 5
A
419 422parallel
Strand 6
A
117 122parallel
Strand 7
A
175 185parallel
Strand 8
A
230 236anti-parallel
Strand 9
A
206 212anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
367 368anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 76first strand
Strand 2
B
493 502anti-parallel
Strand 3
B
90 95parallel
Strand 4
B
446 451parallel
Strand 5
B
419 422parallel
Strand 6
B
117 122parallel
Strand 7
B
175 185parallel
Strand 8
B
230 236anti-parallel
Strand 9
B
206 212anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
154 155anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
226 227anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
367 368anti-parallel
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