Analysis of interatomic Contacts of Structural Units in PDB entry:
7DT1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DT1 entry

There are 2 chains in PDB entry 7DT1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 191	SER 1036
B	ALA 191	MET 1035

There are 71 helices in PDB entry 7DT1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	192	197	Right-handed 310
Helix 2	AA2	A	243	245	Right-handed 310
Helix 3	AA3	A	249	262	Right-handed alpha
Helix 4	AA4	A	267	271	Right-handed 310
Helix 5	AA5	A	273	278	Right-handed alpha
Helix 6	AA6	A	285	308	Right-handed alpha
Helix 7	AA7	A	310	323	Right-handed alpha
Helix 8	AA8	A	324	333	Right-handed 310
Helix 9	AA9	A	334	338	Right-handed 310
Helix 10	AB1	A	369	373	Right-handed 310
Helix 11	AB2	A	382	386	Right-handed 310
Helix 12	AB3	A	408	423	Right-handed alpha
Helix 13	AB4	A	424	429	Right-handed alpha
Helix 14	AB5	A	450	465	Right-handed alpha
Helix 15	AB6	A	469	474	Right-handed alpha
Helix 16	AB7	A	485	494	Right-handed alpha
Helix 17	AB8	A	502	513	Right-handed alpha
Helix 18	AB9	A	523	528	Right-handed alpha
Helix 19	AC1	A	551	566	Right-handed alpha
Helix 20	AC2	A	579	596	Right-handed alpha
Helix 21	AC3	A	605	614	Right-handed alpha
Helix 22	AC4	A	625	629	Right-handed alpha
Helix 23	AC5	A	642	657	Right-handed alpha
Helix 24	AC6	A	689	694	Right-handed alpha
Helix 25	AC7	A	717	721	Right-handed 310
Helix 26	AC8	A	783	787	Right-handed 310
Helix 27	AC9	A	798	803	Right-handed alpha
Helix 28	AD1	A	819	822	Right-handed 310
Helix 29	AD2	A	823	831	Right-handed alpha
Helix 30	AD3	A	831	838	Right-handed alpha
Helix 31	AD4	A	880	894	Right-handed alpha
Helix 32	AD5	A	947	955	Right-handed alpha
Helix 33	AD6	A	958	966	Right-handed alpha
Helix 34	AD7	A	967	971	Right-handed 310
Helix 35	AD8	A	991	993	Right-handed 310
Helix 36	AD9	B	192	197	Right-handed 310
Helix 37	AE1	B	243	245	Right-handed 310
Helix 38	AE2	B	249	262	Right-handed alpha
Helix 39	AE3	B	267	271	Right-handed 310
Helix 40	AE4	B	273	278	Right-handed alpha
Helix 41	AE5	B	285	307	Right-handed alpha
Helix 42	AE6	B	310	323	Right-handed alpha
Helix 43	AE7	B	324	333	Right-handed 310
Helix 44	AE8	B	334	338	Right-handed 310
Helix 45	AE9	B	369	373	Right-handed 310
Helix 46	AF1	B	382	386	Right-handed 310
Helix 47	AF2	B	408	424	Right-handed alpha
Helix 48	AF3	B	424	429	Right-handed alpha
Helix 49	AF4	B	450	465	Right-handed alpha
Helix 50	AF5	B	469	475	Right-handed alpha
Helix 51	AF6	B	485	494	Right-handed alpha
Helix 52	AF7	B	502	513	Right-handed alpha
Helix 53	AF8	B	523	528	Right-handed alpha
Helix 54	AF9	B	551	567	Right-handed alpha
Helix 55	AG1	B	570	575	Right-handed 310
Helix 56	AG2	B	579	596	Right-handed alpha
Helix 57	AG3	B	605	614	Right-handed alpha
Helix 58	AG4	B	625	629	Right-handed alpha
Helix 59	AG5	B	642	657	Right-handed alpha
Helix 60	AG6	B	689	694	Right-handed alpha
Helix 61	AG7	B	717	721	Right-handed 310
Helix 62	AG8	B	783	787	Right-handed 310
Helix 63	AG9	B	798	803	Right-handed alpha
Helix 64	AH1	B	819	822	Right-handed 310
Helix 65	AH2	B	823	831	Right-handed alpha
Helix 66	AH3	B	831	838	Right-handed alpha
Helix 67	AH4	B	880	894	Right-handed alpha
Helix 68	AH5	B	947	955	Right-handed alpha
Helix 69	AH6	B	958	966	Right-handed alpha
Helix 70	AH7	B	967	972	Right-handed alpha
Helix 71	AH8	B	991	993	Right-handed 310

There are 16 sheets in PDB entry 7DT1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	219	first strand
Strand 2	A	240	241	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	232	233	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	906	907	first strand
Strand 2	A	402	404	anti-parallel
Strand 3	A	995	999	anti-parallel
Strand 4	A	353	356	anti-parallel
Strand 5	A	912	921	anti-parallel
Strand 6	A	938	945	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	480	first strand
Strand 2	A	439	443	parallel
Strand 3	A	897	903	parallel
Strand 4	A	842	845	parallel
Strand 5	A	806	808	parallel
Strand 6	A	620	624	parallel
Strand 7	A	545	548	parallel
Strand 8	A	500	501	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	661	667	anti-parallel
Strand 3	A	670	675	anti-parallel
Strand 4	A	697	702	anti-parallel
Strand 5	A	764	773	anti-parallel
Strand 6	A	724	732	anti-parallel
Strand 7	A	744	745	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	737	first strand
Strand 2	A	724	732	anti-parallel
Strand 3	A	764	773	anti-parallel
Strand 4	A	759	761	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	710	715	first strand
Strand 2	A	751	756	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	851	first strand
Strand 2	A	863	865	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	219	first strand
Strand 2	B	240	241	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	232	233	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	906	907	first strand
Strand 2	B	402	404	anti-parallel
Strand 3	B	995	999	anti-parallel
Strand 4	B	353	356	anti-parallel
Strand 5	B	912	921	anti-parallel
Strand 6	B	938	945	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	480	first strand
Strand 2	B	439	442	parallel
Strand 3	B	897	902	parallel
Strand 4	B	842	845	parallel
Strand 5	B	806	808	parallel
Strand 6	B	620	624	parallel
Strand 7	B	545	548	parallel
Strand 8	B	500	501	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	536	first strand
Strand 2	B	661	667	anti-parallel
Strand 3	B	670	675	anti-parallel
Strand 4	B	697	702	anti-parallel
Strand 5	B	764	773	anti-parallel
Strand 6	B	724	732	anti-parallel
Strand 7	B	743	745	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	735	737	first strand
Strand 2	B	724	732	anti-parallel
Strand 3	B	764	773	anti-parallel
Strand 4	B	759	761	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	710	715	first strand
Strand 2	B	751	756	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	851	first strand
Strand 2	B	863	865	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DT1

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DT1