Analysis of interatomic Contacts of Structural Units in PDB entry:
7DTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DTP entry

There is 1 chain in PDB entry 7DTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2TYR 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 7DTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
55 67Right-handed alpha
Helix 3
AA3
A
68 69Right-handed 310
Helix 4
AA4
A
70 75Right-handed 310
Helix 5
AA5
A
105 110Right-handed 310
Helix 6
AA6
A
115 122Right-handed 310
Helix 7
AA7
A
157 173Right-handed alpha
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
A
235 246Right-handed alpha
Helix 10
AB1
A
255 273Right-handed alpha
Helix 11
AB2
A
314 320Right-handed alpha
Helix 12
AB3
A
321 336Right-handed alpha
Helix 13
AB4
A
337 349Right-handed alpha
Helix 14
AB5
A
429 438Right-handed alpha
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There are 4 sheets in PDB entry 7DTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 11first strand
Strand 2
A
95 102anti-parallel
Strand 3
A
133 139parallel
Strand 4
A
145 152anti-parallel
Strand 5
A
42 49anti-parallel
Strand 6
A
395 398anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
76 79anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 234first strand
Strand 2
A
419 426anti-parallel
Strand 3
A
406 411anti-parallel
Strand 4
A
373 377parallel
Strand 5
A
279 287parallel
Strand 6
A
305 308anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 234first strand
Strand 2
A
419 426anti-parallel
Strand 3
A
406 411anti-parallel
Strand 4
A
373 377parallel
Strand 5
A
279 287parallel
Strand 6
A
311 313anti-parallel
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