Analysis of interatomic Contacts of Structural Units in PDB entry:
7DTU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DTU entry

There are 2 chains in PDB entry 7DTU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 21ILE 859
B
 GLY 21ILE 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 7DTU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 84Right-handed alpha
Helix 2
AA2
A
103 115Right-handed alpha
Helix 3
AA3
A
116 122Right-handed 310
Helix 4
AA4
A
126 130Right-handed 310
Helix 5
AA5
A
146 161Right-handed alpha
Helix 6
AA6
A
171 176Right-handed 310
Helix 7
AA7
A
190 204Right-handed alpha
Helix 8
AA8
A
218 233Right-handed alpha
Helix 9
AA9
A
248 261Right-handed alpha
Helix 10
AB1
A
276 287Right-handed alpha
Helix 11
AB2
A
329 335Right-handed alpha
Helix 12
AB3
A
338 342Right-handed 310
Helix 13
AB4
A
346 357Right-handed alpha
Helix 14
AB5
A
400 404Right-handed 310
Helix 15
AB6
A
415 436Right-handed alpha
Helix 16
AB7
A
444 448Right-handed 310
Helix 17
AB8
A
456 466Right-handed alpha
Helix 18
AB9
A
524 528Right-handed 310
Helix 19
AC1
A
529 533Right-handed 310
Helix 20
AC2
A
610 637Right-handed alpha
Helix 21
AC3
A
652 665Right-handed alpha
Helix 22
AC4
A
666 669Right-handed 310
Helix 23
AC5
A
673 679Right-handed alpha
Helix 24
AC6
A
681 691Right-handed alpha
Helix 25
AC7
A
692 697Right-handed alpha
Helix 26
AC8
A
728 746Right-handed alpha
Helix 27
AC9
A
770 792Right-handed alpha
Helix 28
AD1
A
793 797Right-handed 310
Helix 29
AD2
A
802 827Right-handed alpha
Helix 30
AD3
A
829 858Right-handed alpha
Helix 31
AD4
B
64 84Right-handed alpha
Helix 32
AD5
B
103 115Right-handed alpha
Helix 33
AD6
B
116 122Right-handed 310
Helix 34
AD7
B
126 130Right-handed 310
Helix 35
AD8
B
146 161Right-handed alpha
Helix 36
AD9
B
171 176Right-handed 310
Helix 37
AE1
B
190 204Right-handed alpha
Helix 38
AE2
B
218 233Right-handed alpha
Helix 39
AE3
B
248 261Right-handed alpha
Helix 40
AE4
B
276 287Right-handed alpha
Helix 41
AE5
B
329 335Right-handed alpha
Helix 42
AE6
B
338 342Right-handed 310
Helix 43
AE7
B
346 357Right-handed alpha
Helix 44
AE8
B
400 404Right-handed 310
Helix 45
AE9
B
415 436Right-handed alpha
Helix 46
AF1
B
444 448Right-handed 310
Helix 47
AF2
B
456 466Right-handed alpha
Helix 48
AF3
B
524 528Right-handed 310
Helix 49
AF4
B
529 533Right-handed 310
Helix 50
AF5
B
610 637Right-handed alpha
Helix 51
AF6
B
652 665Right-handed alpha
Helix 52
AF7
B
666 669Right-handed 310
Helix 53
AF8
B
673 679Right-handed alpha
Helix 54
AF9
B
681 691Right-handed alpha
Helix 55
AG1
B
692 697Right-handed alpha
Helix 56
AG2
B
728 746Right-handed alpha
Helix 57
AG3
B
770 792Right-handed alpha
Helix 58
AG4
B
793 797Right-handed 310
Helix 59
AG5
B
802 827Right-handed alpha
Helix 60
AG6
B
829 858Right-handed alpha
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There are 12 sheets in PDB entry 7DTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
32 33parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
93 99anti-parallel
Strand 3
A
37 38parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
164 166parallel
Strand 3
A
183 185parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 243first strand
Strand 2
A
208 214parallel
Strand 3
A
266 270parallel
Strand 4
A
292 295parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 321first strand
Strand 2
A
489 496anti-parallel
Strand 3
A
503 511anti-parallel
Strand 4
A
521 522anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 470first strand
Strand 2
A
476 478anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
32 33parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
93 99anti-parallel
Strand 3
B
37 38parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
164 166parallel
Strand 3
B
183 185parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 243first strand
Strand 2
B
208 214parallel
Strand 3
B
266 270parallel
Strand 4
B
292 295parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 321first strand
Strand 2
B
489 496anti-parallel
Strand 3
B
503 511anti-parallel
Strand 4
B
521 522anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
468 470first strand
Strand 2
B
476 478anti-parallel
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