Analysis of interatomic Contacts of Structural Units in PDB entry:
7DU9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DU9 entry

There are 2 chains in PDB entry 7DU9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 714LYS 1011
B
 GLY 700ARG 1012
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 7DU9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
720 722Right-handed 310
Helix 2
AA2
A
765 782Right-handed alpha
Helix 3
AA3
A
811 822Right-handed alpha
Helix 4
AA4
A
847 868Right-handed alpha
Helix 5
AA5
A
914 918Right-handed 310
Helix 6
AA6
A
919 926Right-handed alpha
Helix 7
AA7
A
929 946Right-handed alpha
Helix 8
AA8
A
956 958Right-handed 310
Helix 9
AA9
A
959 967Right-handed alpha
Helix 10
AB1
A
977 988Right-handed alpha
Helix 11
AB2
A
991 995Right-handed 310
Helix 12
AB3
A
997 1011Right-handed alpha
Helix 13
AB4
B
701 710Right-handed alpha
Helix 14
AB5
B
720 722Right-handed 310
Helix 15
AB6
B
746 749Right-handed 310
Helix 16
AB7
B
765 781Right-handed alpha
Helix 17
AB8
B
811 819Right-handed alpha
Helix 18
AB9
B
847 868Right-handed alpha
Helix 19
AC1
B
876 878Right-handed 310
Helix 20
AC2
B
914 918Right-handed 310
Helix 21
AC3
B
919 926Right-handed alpha
Helix 22
AC4
B
929 946Right-handed alpha
Helix 23
AC5
B
956 967Right-handed alpha
Helix 24
AC6
B
977 988Right-handed alpha
Helix 25
AC7
B
997 1011Right-handed alpha
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There are 8 sheets in PDB entry 7DU9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 732first strand
Strand 2
A
736 744anti-parallel
Strand 3
A
752 760anti-parallel
Strand 4
A
801 805anti-parallel
Strand 5
A
790 794anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
825 826first strand
Strand 2
A
845 846parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 871first strand
Strand 2
A
897 898anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
880 883first strand
Strand 2
A
887 890anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
905 906first strand
Strand 2
A
927 928anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 732first strand
Strand 2
B
736 744anti-parallel
Strand 3
B
752 760anti-parallel
Strand 4
B
801 805anti-parallel
Strand 5
B
790 794anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
870 871first strand
Strand 2
B
897 898anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
880 882first strand
Strand 2
B
888 890anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il