Analysis of interatomic Contacts of Structural Units in PDB entry:
7DUW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DUW entry

There are 2 chains in PDB entry 7DUW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 24GLY 860
B
 LEU 24GLY 860
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 7DUW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 26Right-handed 310
Helix 2
AA2
A
27 51Right-handed alpha
Helix 3
AA3
A
55 65Right-handed alpha
Helix 4
AA4
A
67 97Right-handed alpha
Helix 5
AA5
A
101 117Right-handed alpha
Helix 6
AA6
A
121 124Right-handed 310
Helix 7
AA7
A
125 138Right-handed alpha
Helix 8
AA8
A
140 175Right-handed alpha
Helix 9
AA9
A
176 179Right-handed 310
Helix 10
AB1
A
181 203Right-handed alpha
Helix 11
AB2
A
220 246Right-handed alpha
Helix 12
AB3
A
252 270Right-handed alpha
Helix 13
AB4
A
272 276Right-handed 310
Helix 14
AB5
A
277 287Right-handed alpha
Helix 15
AB6
A
292 325Right-handed alpha
Helix 16
AB7
A
335 365Right-handed alpha
Helix 17
AB8
A
368 379Right-handed alpha
Helix 18
AB9
A
380 407Right-handed alpha
Helix 19
AC1
A
409 431Right-handed alpha
Helix 20
AC2
A
433 450Right-handed alpha
Helix 21
AC3
A
451 454Right-handed 310
Helix 22
AC4
A
466 488Right-handed alpha
Helix 23
AC5
A
494 499Right-handed 310
Helix 24
AC6
A
506 530Right-handed alpha
Helix 25
AC7
A
542 555Right-handed alpha
Helix 26
AC8
A
557 566Right-handed 310
Helix 27
AC9
A
598 600Right-handed 310
Helix 28
AD1
A
601 616Right-handed alpha
Helix 29
AD2
A
626 628Right-handed 310
Helix 30
AD3
A
629 636Right-handed alpha
Helix 31
AD4
A
658 660Right-handed 310
Helix 32
AD5
A
661 674Right-handed alpha
Helix 33
AD6
A
686 704Right-handed alpha
Helix 34
AD7
A
717 723Right-handed alpha
Helix 35
AD8
A
764 781Right-handed alpha
Helix 36
AD9
A
793 799Right-handed alpha
Helix 37
AE1
A
806 819Right-handed alpha
Helix 38
AE2
A
824 830Right-handed alpha
Helix 39
AE3
A
847 860Right-handed alpha
Helix 40
AE4
B
24 26Right-handed 310
Helix 41
AE5
B
27 51Right-handed alpha
Helix 42
AE6
B
55 65Right-handed alpha
Helix 43
AE7
B
67 97Right-handed alpha
Helix 44
AE8
B
101 117Right-handed alpha
Helix 45
AE9
B
121 124Right-handed 310
Helix 46
AF1
B
125 138Right-handed alpha
Helix 47
AF2
B
140 175Right-handed alpha
Helix 48
AF3
B
176 179Right-handed 310
Helix 49
AF4
B
181 203Right-handed alpha
Helix 50
AF5
B
220 246Right-handed alpha
Helix 51
AF6
B
252 270Right-handed alpha
Helix 52
AF7
B
272 276Right-handed 310
Helix 53
AF8
B
277 287Right-handed alpha
Helix 54
AF9
B
292 325Right-handed alpha
Helix 55
AG1
B
335 365Right-handed alpha
Helix 56
AG2
B
368 379Right-handed alpha
Helix 57
AG3
B
380 407Right-handed alpha
Helix 58
AG4
B
409 431Right-handed alpha
Helix 59
AG5
B
433 450Right-handed alpha
Helix 60
AG6
B
451 454Right-handed 310
Helix 61
AG7
B
466 488Right-handed alpha
Helix 62
AG8
B
494 499Right-handed 310
Helix 63
AG9
B
506 530Right-handed alpha
Helix 64
AH1
B
542 555Right-handed alpha
Helix 65
AH2
B
557 566Right-handed 310
Helix 66
AH3
B
598 600Right-handed 310
Helix 67
AH4
B
601 616Right-handed alpha
Helix 68
AH5
B
626 628Right-handed 310
Helix 69
AH6
B
629 636Right-handed alpha
Helix 70
AH7
B
658 660Right-handed 310
Helix 71
AH8
B
661 674Right-handed alpha
Helix 72
AH9
B
686 704Right-handed alpha
Helix 73
AI1
B
717 723Right-handed alpha
Helix 74
AI2
B
764 781Right-handed alpha
Helix 75
AI3
B
793 799Right-handed alpha
Helix 76
AI4
B
806 819Right-handed alpha
Helix 77
AI5
B
824 830Right-handed alpha
Helix 78
AI6
B
847 860Right-handed alpha
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There are 4 sheets in PDB entry 7DUW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
215 216anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 572first strand
Strand 2
A
579 585anti-parallel
Strand 3
A
588 591anti-parallel
Strand 4
A
619 625parallel
Strand 5
A
834 843anti-parallel
Strand 6
A
638 650anti-parallel
Strand 7
A
784 790anti-parallel
Strand 8
A
749 757parallel
Strand 9
A
734 742anti-parallel
Strand 10
A
726 731anti-parallel
Strand 11
A
676 681anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
215 216anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
569 572first strand
Strand 2
B
579 585anti-parallel
Strand 3
B
588 591anti-parallel
Strand 4
B
619 625parallel
Strand 5
B
834 843anti-parallel
Strand 6
B
638 650anti-parallel
Strand 7
B
784 790anti-parallel
Strand 8
B
749 757parallel
Strand 9
B
734 742anti-parallel
Strand 10
B
726 731anti-parallel
Strand 11
B
676 681anti-parallel
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