Analysis of interatomic Contacts of Structural Units in PDB entry:
7DV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DV4 entry

There are 8 chains in PDB entry 7DV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ASP 118
B
 GLU 2SER 120
C
 LYS 1ASP 118
D
 GLU 2VAL 118
E
 MET 3ASP 118
F
 GLU 2SER 120
G
 ALA 2ASP 118
H
 GLY 1SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 7DV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 89Right-handed 310
Helix 2
AA2
B
29 33Right-handed 310
Helix 3
AA3
B
87 91Right-handed 310
Helix 4
AA4
D
29 33Right-handed 310
Helix 5
AA5
D
62 65Right-handed 310
Helix 6
AA6
D
87 91Right-handed 310
Helix 7
AA7
E
85 89Right-handed 310
Helix 8
AA8
F
29 33Right-handed 310
Helix 9
AA9
F
62 65Right-handed 310
Helix 10
AB1
F
87 91Right-handed 310
Helix 11
AB2
G
85 89Right-handed 310
Helix 12
AB3
H
29 33Right-handed 310
Helix 13
AB4
H
87 91Right-handed 310
Back to top of page

There are 22 sheets in PDB entry 7DV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 72first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
19 25anti-parallel
Strand 4
A
5 6anti-parallel
Strand 5
G
45 55anti-parallel
Strand 6
G
33 42anti-parallel
Strand 7
G
90 100anti-parallel
Strand 8
G
61 62first strand
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
10 12first strand
Strand 2
G
112 115parallel
Strand 3
G
90 100anti-parallel
Strand 4
G
33 42anti-parallel
Strand 5
G
45 55anti-parallel
Strand 6
G
105 108first strand
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
112 116parallel
Strand 3
A
90 100anti-parallel
Strand 4
A
33 41anti-parallel
Strand 5
A
46 55anti-parallel
Strand 6
A
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
112 116parallel
Strand 3
A
90 100anti-parallel
Strand 4
A
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
114 118parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
35 40anti-parallel
Strand 5
B
47 52anti-parallel
Strand 6
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
114 118parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 72first strand
Strand 2
C
76 81anti-parallel
Strand 3
C
19 25anti-parallel
Strand 4
C
5 6anti-parallel
Strand 5
E
45 55anti-parallel
Strand 6
E
33 42anti-parallel
Strand 7
E
90 100anti-parallel
Strand 8
E
61 62first strand
Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
112 117parallel
Strand 3
E
90 100anti-parallel
Strand 4
E
33 42anti-parallel
Strand 5
E
45 55anti-parallel
Strand 6
E
105 108first strand
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 116parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
33 42anti-parallel
Strand 5
C
45 55anti-parallel
Strand 6
C
61 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 116parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
105 108anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
18 26anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
46 52anti-parallel
Strand 3
D
35 40anti-parallel
Strand 4
D
92 98anti-parallel
Strand 5
D
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
58 60first strand
Strand 2
D
46 52anti-parallel
Strand 3
D
35 40anti-parallel
Strand 4
D
92 98anti-parallel
Strand 5
D
114 116anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 6first strand
Strand 2
E
17 25anti-parallel
Strand 3
E
76 84anti-parallel
Strand 4
E
68 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 8first strand
Strand 2
F
19 26anti-parallel
Strand 3
F
78 83anti-parallel
Strand 4
F
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
114 118parallel
Strand 3
F
92 98anti-parallel
Strand 4
F
35 40anti-parallel
Strand 5
F
46 52anti-parallel
Strand 6
F
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 13first strand
Strand 2
F
114 118parallel
Strand 3
F
92 98anti-parallel
Strand 4
F
109 110anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
19 24first strand
Strand 2
G
76 81anti-parallel
Strand 3
G
68 72anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 8first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
114 118parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
35 40anti-parallel
Strand 5
H
46 52anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 13first strand
Strand 2
H
114 118parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
109 110anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il