Analysis of interatomic Contacts of Structural Units in PDB entry:
7DV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DV5 entry

There is 1 chain in PDB entry 7DV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
U
 GLY 46THR 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 7DV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
U
55 59Right-handed 310
Helix 2
AA2
U
74 87Right-handed alpha
Helix 3
AA3
U
92 99Right-handed alpha
Helix 4
AA4
U
134 149Right-handed alpha
Helix 5
AA5
U
149 154Right-handed alpha
Helix 6
AA6
U
157 162Right-handed alpha
Helix 7
AA7
U
164 168Right-handed 310
Helix 8
AA8
U
170 182Right-handed alpha
Helix 9
AA9
U
187 192Right-handed alpha
Helix 10
AB1
U
214 222Right-handed alpha
Helix 11
AB2
U
228 236Right-handed alpha
Helix 12
AB3
U
238 243Right-handed alpha
Helix 13
AB4
U
244 248Right-handed 310
Helix 14
AB5
U
250 255Right-handed alpha
Helix 15
AB6
U
265 275Right-handed alpha
Helix 16
AB7
U
287 294Right-handed alpha
Helix 17
AB8
U
296 301Right-handed alpha
Helix 18
AB9
U
301 306Right-handed alpha
Helix 19
AC1
U
320 335Right-handed alpha
Helix 20
AC2
U
336 341Right-handed alpha
Helix 21
AC3
U
342 350Right-handed alpha
Helix 22
AC4
U
362 375Right-handed alpha
Helix 23
AC5
U
381 390Right-handed alpha
Helix 24
AC6
U
392 397Right-handed alpha
Helix 25
AC7
U
490 497Right-handed alpha
Helix 26
AC8
U
524 535Right-handed alpha
Helix 27
AC9
U
537 543Right-handed alpha
Helix 28
AD1
U
560 563Right-handed 310
Helix 29
AD2
U
564 574Right-handed alpha
Helix 30
AD3
U
593 603Right-handed alpha
Helix 31
AD4
U
652 656Right-handed 310
Helix 32
AD5
U
742 748Right-handed alpha
Helix 33
AD6
U
749 752Right-handed 310
Helix 34
AD7
U
753 761Right-handed alpha
Helix 35
AD8
U
767 780Right-handed alpha
Helix 36
AD9
U
789 794Right-handed alpha
Helix 37
AE1
U
802 810Right-handed alpha
Helix 38
AE2
U
811 819Right-handed alpha
Helix 39
AE3
U
819 841Right-handed alpha
Helix 40
AE4
U
868 880Right-handed alpha
Helix 41
AE5
U
887 897Right-handed alpha
Helix 42
AE6
U
900 905Right-handed alpha
Helix 43
AE7
U
908 917Right-handed alpha
Helix 44
AE8
U
922 926Right-handed 310
Helix 45
AE9
U
929 933Right-handed 310
Helix 46
AF1
U
935 940Right-handed alpha
Helix 47
AF2
U
947 952Right-handed alpha
Helix 48
AF3
U
965 967Right-handed 310
Helix 49
AF4
U
968 973Right-handed alpha
Helix 50
AF5
U
991 996Right-handed alpha
Helix 51
AF6
U
996 1009Right-handed alpha
Helix 52
AF7
U
1014 1019Right-handed alpha
Helix 53
AF8
U
1029 1034Right-handed alpha
Helix 54
AF9
U
1047 1056Right-handed alpha
Helix 55
AG1
U
1119 1125Right-handed alpha
Helix 56
AG2
U
1148 1154Right-handed alpha
Helix 57
AG3
U
1170 1176Right-handed alpha
Helix 58
AG4
U
1185 1191Right-handed alpha
Helix 59
AG5
U
1220 1223Right-handed 310
Helix 60
AG6
U
1224 1234Right-handed alpha
Helix 61
AG7
U
1250 1264Right-handed alpha
Helix 62
AG8
U
1299 1303Right-handed 310
Helix 63
AG9
U
1308 1315Right-handed alpha
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There are 3 sheets in PDB entry 7DV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
420 426first strand
Strand 2
U
439 445anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
498 501first strand
Strand 2
U
579 582parallel
Strand 3
U
611 612parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
U
1156 1159first strand
Strand 2
U
1239 1242parallel
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