Analysis of interatomic Contacts of Structural Units in PDB entry:
7DV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DV8 entry

There are 14 chains in PDB entry 7DV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 997	VAL 1069
B	ARG 997	VAL 1069
C	ARG 997	VAL 1069
D	ARG 997	VAL 1069
E	ARG 997	VAL 1069
F	ARG 997	VAL 1069
G	ARG 997	VAL 1069
H	ARG 997	VAL 1069
I	ARG 997	VAL 1069
J	ARG 997	VAL 1069
K	ARG 997	VAL 1069
L	ARG 997	VAL 1069
M	ARG 997	VAL 1069
N	ARG 997	VAL 1069

There are 28 helices in PDB entry 7DV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1008	1021	Right-handed alpha
Helix 2	AA2	A	1046	1059	Right-handed alpha
Helix 3	AA3	B	1008	1021	Right-handed alpha
Helix 4	AA4	B	1046	1059	Right-handed alpha
Helix 5	AA5	C	1008	1021	Right-handed alpha
Helix 6	AA6	C	1046	1059	Right-handed alpha
Helix 7	AA7	D	1008	1021	Right-handed alpha
Helix 8	AA8	D	1046	1059	Right-handed alpha
Helix 9	AA9	E	1008	1021	Right-handed alpha
Helix 10	AB1	E	1046	1059	Right-handed alpha
Helix 11	AB2	F	1008	1021	Right-handed alpha
Helix 12	AB3	F	1046	1059	Right-handed alpha
Helix 13	AB4	G	1008	1021	Right-handed alpha
Helix 14	AB5	G	1046	1058	Right-handed alpha
Helix 15	AB6	H	1009	1021	Right-handed alpha
Helix 16	AB7	H	1046	1058	Right-handed alpha
Helix 17	AB8	I	1008	1021	Right-handed alpha
Helix 18	AB9	I	1046	1058	Right-handed alpha
Helix 19	AC1	J	1008	1021	Right-handed alpha
Helix 20	AC2	J	1046	1058	Right-handed alpha
Helix 21	AC3	K	1008	1022	Right-handed alpha
Helix 22	AC4	K	1046	1059	Right-handed alpha
Helix 23	AC5	L	1008	1022	Right-handed alpha
Helix 24	AC6	L	1046	1059	Right-handed alpha
Helix 25	AC7	M	1008	1022	Right-handed alpha
Helix 26	AC8	M	1046	1059	Right-handed alpha
Helix 27	AC9	N	1008	1022	Right-handed alpha
Helix 28	AD1	N	1046	1059	Right-handed alpha

There are 7 sheets in PDB entry 7DV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1061	1068	first strand
Strand 2	J	998	1004	anti-parallel
Strand 3	J	1037	1042	anti-parallel
Strand 4	J	1025	1031	anti-parallel
Strand 5	A	1025	1031	anti-parallel
Strand 6	A	1037	1042	anti-parallel
Strand 7	A	998	1004	anti-parallel
Strand 8	A	1061	1068	anti-parallel
Strand 9	G	1061	1068	anti-parallel
Strand 10	G	998	1004	anti-parallel
Strand 11	G	1037	1042	anti-parallel
Strand 12	G	1025	1031	anti-parallel
Strand 13	M	1025	1031	anti-parallel
Strand 14	M	1037	1042	anti-parallel
Strand 15	M	998	1004	anti-parallel
Strand 16	M	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1061	1068	first strand
Strand 2	I	998	1004	anti-parallel
Strand 3	I	1037	1042	anti-parallel
Strand 4	I	1025	1031	anti-parallel
Strand 5	B	1025	1031	anti-parallel
Strand 6	B	1037	1042	anti-parallel
Strand 7	B	998	1004	anti-parallel
Strand 8	B	1061	1068	anti-parallel
Strand 9	H	1061	1068	anti-parallel
Strand 10	H	998	1004	anti-parallel
Strand 11	H	1037	1042	anti-parallel
Strand 12	H	1025	1031	anti-parallel
Strand 13	N	1025	1031	anti-parallel
Strand 14	N	1037	1042	anti-parallel
Strand 15	N	998	1004	anti-parallel
Strand 16	N	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1025	1031	first strand
Strand 2	C	1037	1042	anti-parallel
Strand 3	C	998	1004	anti-parallel
Strand 4	C	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1061	1068	first strand
Strand 2	D	998	1004	anti-parallel
Strand 3	D	1037	1042	anti-parallel
Strand 4	D	1025	1031	anti-parallel
Strand 5	F	1025	1031	anti-parallel
Strand 6	F	1037	1042	anti-parallel
Strand 7	F	998	1004	anti-parallel
Strand 8	F	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1025	1031	first strand
Strand 2	E	1037	1042	anti-parallel
Strand 3	E	998	1004	anti-parallel
Strand 4	E	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1025	1031	first strand
Strand 2	K	1037	1042	anti-parallel
Strand 3	K	998	1004	anti-parallel
Strand 4	K	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1025	1031	first strand
Strand 2	L	1037	1042	anti-parallel
Strand 3	L	998	1004	anti-parallel
Strand 4	L	1061	1068	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DV8