Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DVB entry

There are 4 chains in PDB entry 7DVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23MET 545
B
 GLU 23MET 545
C
 GLU 23MET 545
D
 ILE 24MET 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 7DVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 74Right-handed alpha
Helix 2
AA2
A
116 130Right-handed alpha
Helix 3
AA3
A
132 138Right-handed alpha
Helix 4
AA4
A
175 189Right-handed alpha
Helix 5
AA5
A
212 217Right-handed alpha
Helix 6
AA6
A
243 256Right-handed alpha
Helix 7
AA7
A
271 278Right-handed alpha
Helix 8
AA8
A
278 283Right-handed alpha
Helix 9
AA9
A
307 325Right-handed alpha
Helix 10
AB1
A
339 344Right-handed alpha
Helix 11
AB2
A
345 355Right-handed alpha
Helix 12
AB3
A
361 378Right-handed alpha
Helix 13
AB4
A
379 383Right-handed 310
Helix 14
AB5
A
391 395Right-handed 310
Helix 15
AB6
A
396 400Right-handed 310
Helix 16
AB7
A
411 422Right-handed alpha
Helix 17
AB8
A
430 435Right-handed alpha
Helix 18
AB9
A
456 463Right-handed alpha
Helix 19
AC1
A
473 475Right-handed 310
Helix 20
AC2
A
491 500Right-handed alpha
Helix 21
AC3
A
501 512Right-handed alpha
Helix 22
AC4
A
513 517Right-handed 310
Helix 23
AC5
A
518 527Right-handed alpha
Helix 24
AC6
A
529 537Right-handed alpha
Helix 25
AC7
B
58 74Right-handed alpha
Helix 26
AC8
B
116 130Right-handed alpha
Helix 27
AC9
B
132 138Right-handed alpha
Helix 28
AD1
B
175 189Right-handed alpha
Helix 29
AD2
B
212 217Right-handed alpha
Helix 30
AD3
B
243 256Right-handed alpha
Helix 31
AD4
B
271 278Right-handed alpha
Helix 32
AD5
B
278 283Right-handed alpha
Helix 33
AD6
B
307 325Right-handed alpha
Helix 34
AD7
B
339 344Right-handed alpha
Helix 35
AD8
B
345 355Right-handed alpha
Helix 36
AD9
B
361 378Right-handed alpha
Helix 37
AE1
B
379 383Right-handed 310
Helix 38
AE2
B
391 395Right-handed 310
Helix 39
AE3
B
396 400Right-handed 310
Helix 40
AE4
B
411 422Right-handed alpha
Helix 41
AE5
B
430 435Right-handed alpha
Helix 42
AE6
B
456 463Right-handed alpha
Helix 43
AE7
B
473 475Right-handed 310
Helix 44
AE8
B
491 500Right-handed alpha
Helix 45
AE9
B
501 512Right-handed alpha
Helix 46
AF1
B
513 517Right-handed 310
Helix 47
AF2
B
518 527Right-handed alpha
Helix 48
AF3
B
529 537Right-handed alpha
Helix 49
AF4
C
56 74Right-handed alpha
Helix 50
AF5
C
82 86Right-handed 310
Helix 51
AF6
C
116 130Right-handed alpha
Helix 52
AF7
C
132 138Right-handed alpha
Helix 53
AF8
C
175 189Right-handed alpha
Helix 54
AF9
C
212 217Right-handed alpha
Helix 55
AG1
C
243 256Right-handed alpha
Helix 56
AG2
C
271 278Right-handed alpha
Helix 57
AG3
C
278 283Right-handed alpha
Helix 58
AG4
C
307 325Right-handed alpha
Helix 59
AG5
C
339 344Right-handed alpha
Helix 60
AG6
C
345 355Right-handed alpha
Helix 61
AG7
C
361 378Right-handed alpha
Helix 62
AG8
C
379 383Right-handed 310
Helix 63
AG9
C
391 395Right-handed 310
Helix 64
AH1
C
396 400Right-handed 310
Helix 65
AH2
C
411 422Right-handed alpha
Helix 66
AH3
C
430 435Right-handed alpha
Helix 67
AH4
C
456 463Right-handed alpha
Helix 68
AH5
C
473 475Right-handed 310
Helix 69
AH6
C
491 500Right-handed alpha
Helix 70
AH7
C
501 512Right-handed alpha
Helix 71
AH8
C
513 517Right-handed 310
Helix 72
AH9
C
518 527Right-handed alpha
Helix 73
AI1
C
529 537Right-handed alpha
Helix 74
AI2
D
56 74Right-handed alpha
Helix 75
AI3
D
82 86Right-handed 310
Helix 76
AI4
D
116 130Right-handed alpha
Helix 77
AI5
D
132 138Right-handed alpha
Helix 78
AI6
D
175 189Right-handed alpha
Helix 79
AI7
D
212 217Right-handed alpha
Helix 80
AI8
D
243 256Right-handed alpha
Helix 81
AI9
D
271 278Right-handed alpha
Helix 82
AJ1
D
278 283Right-handed alpha
Helix 83
AJ2
D
307 325Right-handed alpha
Helix 84
AJ3
D
339 344Right-handed alpha
Helix 85
AJ4
D
345 355Right-handed alpha
Helix 86
AJ5
D
361 378Right-handed alpha
Helix 87
AJ6
D
379 383Right-handed 310
Helix 88
AJ7
D
391 395Right-handed 310
Helix 89
AJ8
D
396 400Right-handed 310
Helix 90
AJ9
D
411 422Right-handed alpha
Helix 91
AK1
D
430 435Right-handed alpha
Helix 92
AK2
D
456 463Right-handed alpha
Helix 93
AK3
D
473 475Right-handed 310
Helix 94
AK4
D
491 500Right-handed alpha
Helix 95
AK5
D
501 512Right-handed alpha
Helix 96
AK6
D
513 517Right-handed 310
Helix 97
AK7
D
518 527Right-handed alpha
Helix 98
AK8
D
529 537Right-handed alpha
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There are 12 sheets in PDB entry 7DVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 41first strand
Strand 2
A
148 156anti-parallel
Strand 3
A
101 105anti-parallel
Strand 4
A
110 114anti-parallel
Strand 5
A
87 92parallel
Strand 6
A
45 49parallel
Strand 7
A
76 79parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 168first strand
Strand 2
A
193 197parallel
Strand 3
A
260 264parallel
Strand 4
A
329 331parallel
Strand 5
A
385 389parallel
Strand 6
A
405 408parallel
Strand 7
A
425 428parallel
Strand 8
A
477 484parallel
Strand 9
A
162 168parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 221first strand
Strand 2
A
238 239anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 41first strand
Strand 2
B
148 156anti-parallel
Strand 3
B
101 105anti-parallel
Strand 4
B
110 114anti-parallel
Strand 5
B
87 92parallel
Strand 6
B
45 50parallel
Strand 7
B
76 79parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 168first strand
Strand 2
B
193 197parallel
Strand 3
B
260 264parallel
Strand 4
B
329 331parallel
Strand 5
B
385 389parallel
Strand 6
B
405 408parallel
Strand 7
B
425 428parallel
Strand 8
B
477 484parallel
Strand 9
B
162 168parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
238 239anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 41first strand
Strand 2
C
148 156anti-parallel
Strand 3
C
101 105anti-parallel
Strand 4
C
110 114anti-parallel
Strand 5
C
88 92parallel
Strand 6
C
46 50parallel
Strand 7
C
77 79parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
162 168first strand
Strand 2
C
193 197parallel
Strand 3
C
260 264parallel
Strand 4
C
329 331parallel
Strand 5
C
385 389parallel
Strand 6
C
405 408parallel
Strand 7
C
425 428parallel
Strand 8
C
477 484parallel
Strand 9
C
162 168parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 221first strand
Strand 2
C
238 239anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
32 41first strand
Strand 2
D
148 156anti-parallel
Strand 3
D
101 105anti-parallel
Strand 4
D
110 114anti-parallel
Strand 5
D
88 92parallel
Strand 6
D
45 50parallel
Strand 7
D
76 79parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 168first strand
Strand 2
D
193 197parallel
Strand 3
D
260 264parallel
Strand 4
D
329 331parallel
Strand 5
D
385 389parallel
Strand 6
D
405 408parallel
Strand 7
D
425 428parallel
Strand 8
D
477 484parallel
Strand 9
D
162 168parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
220 221first strand
Strand 2
D
238 239anti-parallel
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