Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DVE entry

There are 2 chains in PDB entry 7DVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	ALA 513
B	ARG 4	ASP 511

There are 24 helices in PDB entry 7DVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	32	Right-handed alpha
Helix 2	AA2	A	53	57	Right-handed 310
Helix 3	AA3	A	59	70	Right-handed alpha
Helix 4	AA4	A	122	127	Right-handed 310
Helix 5	AA5	A	136	140	Right-handed 310
Helix 6	AA6	A	141	146	Right-handed alpha
Helix 7	AA7	A	148	162	Right-handed alpha
Helix 8	AA8	A	175	184	Right-handed alpha
Helix 9	AA9	A	190	194	Right-handed 310
Helix 10	AB1	A	214	225	Right-handed alpha
Helix 11	AB2	A	275	284	Right-handed alpha
Helix 12	AB3	A	349	351	Right-handed 310
Helix 13	AB4	A	405	425	Right-handed alpha
Helix 14	AB5	A	477	481	Right-handed 310
Helix 15	AB6	A	489	511	Right-handed alpha
Helix 16	AB7	B	18	30	Right-handed alpha
Helix 17	AB8	B	136	140	Right-handed 310
Helix 18	AB9	B	141	146	Right-handed alpha
Helix 19	AC1	B	148	162	Right-handed alpha
Helix 20	AC2	B	215	225	Right-handed alpha
Helix 21	AC3	B	275	284	Right-handed alpha
Helix 22	AC4	B	405	423	Right-handed alpha
Helix 23	AC5	B	477	481	Right-handed 310
Helix 24	AC6	B	489	510	Right-handed alpha

There are 10 sheets in PDB entry 7DVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	232	first strand
Strand 2	A	37	40	parallel
Strand 3	A	12	15	parallel
Strand 4	A	267	270	parallel
Strand 5	A	473	475	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	116	117	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	210	212	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	330	333	anti-parallel
Strand 3	A	341	347	anti-parallel
Strand 4	A	366	373	anti-parallel
Strand 5	A	300	307	anti-parallel
Strand 6	A	427	429	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	330	333	anti-parallel
Strand 3	A	341	347	anti-parallel
Strand 4	A	366	373	anti-parallel
Strand 5	A	300	307	anti-parallel
Strand 6	A	435	436	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	243	first strand
Strand 2	A	246	254	anti-parallel
Strand 3	A	260	264	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	390	first strand
Strand 2	A	396	401	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	232	first strand
Strand 2	B	37	40	parallel
Strand 3	B	12	15	parallel
Strand 4	B	267	270	parallel
Strand 5	B	473	475	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	243	first strand
Strand 2	B	246	254	anti-parallel
Strand 3	B	260	264	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	390	first strand
Strand 2	B	396	401	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVE