Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DVK entry

There are 4 chains in PDB entry 7DVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 22	CYS 184
B	ILE 22	CYS 184
C	ILE 22	CYS 184
D	ILE 22	CYS 184

There are 16 helices in PDB entry 7DVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	42	Right-handed alpha
Helix 2	AA2	A	49	56	Right-handed alpha
Helix 3	AA3	A	136	141	Right-handed alpha
Helix 4	AA4	A	153	157	Right-handed 310
Helix 5	AA5	B	29	42	Right-handed alpha
Helix 6	AA6	B	45	48	Right-handed 310
Helix 7	AA7	B	49	57	Right-handed alpha
Helix 8	AA8	B	136	141	Right-handed alpha
Helix 9	AA9	C	29	41	Right-handed alpha
Helix 10	AB1	C	45	48	Right-handed 310
Helix 11	AB2	C	49	56	Right-handed alpha
Helix 12	AB3	C	136	141	Right-handed alpha
Helix 13	AB4	D	29	41	Right-handed alpha
Helix 14	AB5	D	45	48	Right-handed 310
Helix 15	AB6	D	49	56	Right-handed alpha
Helix 16	AB7	D	136	141	Right-handed alpha

There are 4 sheets in PDB entry 7DVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	73	first strand
Strand 2	A	82	91	anti-parallel
Strand 3	A	96	108	anti-parallel
Strand 4	A	114	123	anti-parallel
Strand 5	A	126	135	anti-parallel
Strand 6	A	145	151	anti-parallel
Strand 7	A	160	167	anti-parallel
Strand 8	A	176	184	anti-parallel
Strand 9	A	58	73	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	73	first strand
Strand 2	B	82	90	anti-parallel
Strand 3	B	96	108	anti-parallel
Strand 4	B	114	123	anti-parallel
Strand 5	B	126	135	anti-parallel
Strand 6	B	145	154	anti-parallel
Strand 7	B	160	167	anti-parallel
Strand 8	B	177	184	anti-parallel
Strand 9	B	58	73	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	73	first strand
Strand 2	C	82	90	anti-parallel
Strand 3	C	96	108	anti-parallel
Strand 4	C	114	123	anti-parallel
Strand 5	C	126	135	anti-parallel
Strand 6	C	145	154	anti-parallel
Strand 7	C	160	167	anti-parallel
Strand 8	C	177	184	anti-parallel
Strand 9	C	58	73	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	73	first strand
Strand 2	D	82	91	anti-parallel
Strand 3	D	96	108	anti-parallel
Strand 4	D	114	123	anti-parallel
Strand 5	D	126	135	anti-parallel
Strand 6	D	145	154	anti-parallel
Strand 7	D	160	167	anti-parallel
Strand 8	D	176	184	anti-parallel
Strand 9	D	58	73	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVK