Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DVL entry

There are 2 chains in PDB entry 7DVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 418
B
 SER 2ALA 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 7DVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
82 102Right-handed alpha
Helix 3
AA3
A
103 116Right-handed alpha
Helix 4
AA4
A
132 134Right-handed 310
Helix 5
AA5
A
218 235Right-handed alpha
Helix 6
AA6
A
262 269Right-handed alpha
Helix 7
AA7
A
269 274Right-handed alpha
Helix 8
AA8
A
277 302Right-handed alpha
Helix 9
AA9
A
311 323Right-handed alpha
Helix 10
AB1
A
336 349Right-handed alpha
Helix 11
AB2
A
353 355Right-handed 310
Helix 12
AB3
A
356 361Right-handed alpha
Helix 13
AB4
A
399 403Right-handed 310
Helix 14
AB5
A
407 411Right-handed 310
Helix 15
AB6
B
55 59Right-handed 310
Helix 16
AB7
B
65 69Right-handed 310
Helix 17
AB8
B
82 102Right-handed alpha
Helix 18
AB9
B
103 116Right-handed alpha
Helix 19
AC1
B
132 134Right-handed 310
Helix 20
AC2
B
218 235Right-handed alpha
Helix 21
AC3
B
262 269Right-handed alpha
Helix 22
AC4
B
269 274Right-handed alpha
Helix 23
AC5
B
277 302Right-handed alpha
Helix 24
AC6
B
311 323Right-handed alpha
Helix 25
AC7
B
336 349Right-handed alpha
Helix 26
AC8
B
353 355Right-handed 310
Helix 27
AC9
B
356 361Right-handed alpha
Helix 28
AD1
B
399 403Right-handed 310
Helix 29
AD2
B
407 411Right-handed 310
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There are 10 sheets in PDB entry 7DVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
136 140anti-parallel
Strand 3
A
21 25anti-parallel
Strand 4
A
35 41anti-parallel
Strand 5
A
44 50anti-parallel
Strand 6
A
153 157parallel
Strand 7
A
186 189parallel
Strand 8
A
166 168anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
304 305parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
374 377anti-parallel
Strand 4
A
412 416anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
258 261anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 327first strand
Strand 2
A
333 334anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
136 140anti-parallel
Strand 3
B
21 25anti-parallel
Strand 4
B
35 41anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
153 157parallel
Strand 7
B
186 189parallel
Strand 8
B
166 168anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
304 305parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
374 377anti-parallel
Strand 4
B
412 416anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
244 247first strand
Strand 2
B
258 261anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 327first strand
Strand 2
B
333 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il