Analysis of interatomic Contacts of Structural Units in PDB entry:
7DVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DVM entry

There are 27 chains in PDB entry 7DVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 13
A
 GLY 15GLY 15
A
 SER 17ALA 23
A
 TRP 25GLU 28
A
 ALA 30ALA 45
A
 TRP 47VAL 50
A
 ALA 52VAL 78
A
 ASP 80LEU 115
A
 TRP 117GLY 121
B
 ALA 1ALA 13
B
 GLY 15GLY 15
B
 SER 17ALA 23
B
 TRP 25GLU 28
B
 ALA 30ALA 45
B
 TRP 47VAL 50
B
 ALA 52VAL 78
B
 ASP 80LEU 115
B
 TRP 117GLY 121
C
 ALA 1ALA 13
C
 GLY 15GLY 15
C
 SER 17ALA 23
C
 TRP 25GLU 28
C
 ALA 30ALA 45
C
 TRP 47VAL 50
C
 ALA 52VAL 78
C
 ASP 80LEU 115
C
 TRP 117GLY 121
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 7DVM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 12Right-handed alpha
Helix 2
AA2
A
12 28Right-handed alpha
Helix 3
AA3
A
29 34Right-handed alpha
Helix 4
AA4
A
34 48Right-handed alpha
Helix 5
AA5
A
51 81Right-handed alpha
Helix 6
AA6
A
83 90Right-handed alpha
Helix 7
AA7
A
90 119Right-handed alpha
Helix 8
AA8
B
2 12Right-handed alpha
Helix 9
AA9
B
12 28Right-handed alpha
Helix 10
AB1
B
29 34Right-handed alpha
Helix 11
AB2
B
34 48Right-handed alpha
Helix 12
AB3
B
51 81Right-handed alpha
Helix 13
AB4
B
83 90Right-handed alpha
Helix 14
AB5
B
90 119Right-handed alpha
Helix 15
AB6
C
2 12Right-handed alpha
Helix 16
AB7
C
12 28Right-handed alpha
Helix 17
AB8
C
29 34Right-handed alpha
Helix 18
AB9
C
34 48Right-handed alpha
Helix 19
AC1
C
51 81Right-handed alpha
Helix 20
AC2
C
83 90Right-handed alpha
Helix 21
AC3
C
90 119Right-handed alpha
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There are no sheets in PDB entry 7DVM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il