Analysis of interatomic Contacts of Structural Units in PDB entry:
7DW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DW8 entry

There are 2 chains in PDB entry 7DW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -22ARG 314
B
 MET 1ARG 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 7DW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
20 31Right-handed alpha
Helix 3
AA3
A
32 34Right-handed 310
Helix 4
AA4
A
63 77Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
110 133Right-handed alpha
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
149 164Right-handed alpha
Helix 9
AA9
A
182 186Right-handed 310
Helix 10
AB1
A
199 215Right-handed alpha
Helix 11
AB2
A
230 234Right-handed 310
Helix 12
AB3
A
246 261Right-handed alpha
Helix 13
AB4
A
281 288Right-handed 310
Helix 14
AB5
A
296 308Right-handed alpha
Helix 15
AB6
A
308 313Right-handed alpha
Helix 16
AB7
B
14 20Right-handed alpha
Helix 17
AB8
B
20 31Right-handed alpha
Helix 18
AB9
B
32 34Right-handed 310
Helix 19
AC1
B
63 77Right-handed alpha
Helix 20
AC2
B
94 98Right-handed 310
Helix 21
AC3
B
110 133Right-handed alpha
Helix 22
AC4
B
143 147Right-handed 310
Helix 23
AC5
B
149 164Right-handed alpha
Helix 24
AC6
B
182 186Right-handed 310
Helix 25
AC7
B
199 215Right-handed alpha
Helix 26
AC8
B
230 234Right-handed 310
Helix 27
AC9
B
246 261Right-handed alpha
Helix 28
AD1
B
281 288Right-handed 310
Helix 29
AD2
B
296 308Right-handed alpha
Helix 30
AD3
B
308 313Right-handed alpha
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There are 2 sheets in PDB entry 7DW8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
37 46parallel
Strand 3
A
80 89parallel
Strand 4
A
136 141parallel
Strand 5
A
167 172parallel
Strand 6
A
188 193parallel
Strand 7
A
218 223parallel
Strand 8
A
267 275parallel
Strand 9
A
4 9parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
37 46parallel
Strand 3
B
80 89parallel
Strand 4
B
136 141parallel
Strand 5
B
167 172parallel
Strand 6
B
188 193parallel
Strand 7
B
218 223parallel
Strand 8
B
267 275parallel
Strand 9
B
4 9parallel
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