Analysis of interatomic Contacts of Structural Units in PDB entry:
7DW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DW9 entry

There are 7 chains in PDB entry 7DW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 31	LEU 339
A	CYS 3	LEU 394
B	GLU 3	SER 343
Y	THR 6	GLU 63
N	GLN 1	VAL 126
S	VAL 2	LEU 247
C	CYS 1	GLY 9

There are 34 helices in PDB entry 7DW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	33	67	Right-handed alpha
Helix 2	AA2	R	72	92	Right-handed alpha
Helix 3	AA3	R	92	102	Right-handed alpha
Helix 4	AA4	R	108	143	Right-handed alpha
Helix 5	AA5	R	157	171	Right-handed alpha
Helix 6	AA6	R	173	177	Right-handed alpha
Helix 7	AA7	R	200	214	Right-handed alpha
Helix 8	AA8	R	214	235	Right-handed alpha
Helix 9	AA9	R	264	297	Right-handed alpha
Helix 10	AB1	R	304	311	Right-handed alpha
Helix 11	AB2	R	312	314	Right-handed 310
Helix 12	AB3	R	315	329	Right-handed alpha
Helix 13	AB4	R	329	338	Right-handed alpha
Helix 14	AB5	A	6	39	Right-handed alpha
Helix 15	AB6	A	52	64	Right-handed alpha
Helix 16	AB7	A	233	239	Right-handed 310
Helix 17	AB8	A	266	279	Right-handed alpha
Helix 18	AB9	A	293	304	Right-handed alpha
Helix 19	AC1	A	307	311	Right-handed 310
Helix 20	AC2	A	312	317	Right-handed 310
Helix 21	AC3	A	331	351	Right-handed alpha
Helix 22	AC4	A	370	391	Right-handed alpha
Helix 23	AC5	B	4	26	Right-handed alpha
Helix 24	AC6	B	29	34	Right-handed alpha
Helix 25	AC7	Y	7	25	Right-handed alpha
Helix 26	AC8	Y	29	44	Right-handed alpha
Helix 27	AC9	Y	45	48	Right-handed 310
Helix 28	AD1	Y	55	59	Right-handed 310
Helix 29	AD2	N	28	32	Right-handed 310
Helix 30	AD3	N	87	91	Right-handed 310
Helix 31	AD4	S	28	32	Right-handed 310
Helix 32	AD5	S	53	56	Right-handed 310
Helix 33	AD6	S	87	91	Right-handed 310
Helix 34	AD7	S	220	224	Right-handed 310

There are 16 sheets in PDB entry 7DW9. Click on sheet of interest to get list of strands forming it: AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	214	first strand
Strand 2	A	217	224	anti-parallel
Strand 3	A	40	47	parallel
Strand 4	A	243	249	parallel
Strand 5	A	286	292	parallel
Strand 6	A	359	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	52	first strand
Strand 2	B	335	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	46	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	18	25	anti-parallel
Strand 3	S	78	83	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	110	111	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	142	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel
Strand 6	S	194	195	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	225	231	anti-parallel
Strand 4	S	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DW9