Analysis of interatomic Contacts of Structural Units in PDB entry:
7DWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DWC entry

There are 4 chains in PDB entry 7DWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 262
B
 SER -1LEU 262
C
 SER -1LEU 262
D
 HIS 0LEU 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 7DWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 23Right-handed 310
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
70 72Right-handed 310
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
97 114Right-handed alpha
Helix 6
AA6
A
115 118Right-handed 310
Helix 7
AA7
A
128 139Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
177 189Right-handed 310
Helix 10
AB1
A
210 223Right-handed alpha
Helix 11
AB2
A
247 261Right-handed alpha
Helix 12
AB3
B
21 23Right-handed 310
Helix 13
AB4
B
24 35Right-handed alpha
Helix 14
AB5
B
70 72Right-handed 310
Helix 15
AB6
B
73 80Right-handed alpha
Helix 16
AB7
B
97 114Right-handed alpha
Helix 17
AB8
B
115 118Right-handed 310
Helix 18
AB9
B
128 137Right-handed alpha
Helix 19
AC1
B
164 173Right-handed alpha
Helix 20
AC2
B
177 190Right-handed 310
Helix 21
AC3
B
210 223Right-handed alpha
Helix 22
AC4
B
247 261Right-handed alpha
Helix 23
AC5
C
21 23Right-handed 310
Helix 24
AC6
C
24 35Right-handed alpha
Helix 25
AC7
C
70 72Right-handed 310
Helix 26
AC8
C
73 80Right-handed alpha
Helix 27
AC9
C
97 114Right-handed alpha
Helix 28
AD1
C
115 118Right-handed 310
Helix 29
AD2
C
128 139Right-handed alpha
Helix 30
AD3
C
164 173Right-handed alpha
Helix 31
AD4
C
177 190Right-handed 310
Helix 32
AD5
C
210 223Right-handed alpha
Helix 33
AD6
C
247 261Right-handed alpha
Helix 34
AD7
D
21 23Right-handed 310
Helix 35
AD8
D
24 35Right-handed alpha
Helix 36
AD9
D
70 72Right-handed 310
Helix 37
AE1
D
73 80Right-handed alpha
Helix 38
AE2
D
97 114Right-handed alpha
Helix 39
AE3
D
115 118Right-handed 310
Helix 40
AE4
D
128 139Right-handed alpha
Helix 41
AE5
D
164 173Right-handed alpha
Helix 42
AE6
D
177 190Right-handed 310
Helix 43
AE7
D
210 223Right-handed alpha
Helix 44
AE8
D
247 261Right-handed alpha
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There are 3 sheets in PDB entry 7DWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 19first strand
Strand 2
A
1 8anti-parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
83 88anti-parallel
Strand 5
A
51 56parallel
Strand 6
A
120 126parallel
Strand 7
A
148 152parallel
Strand 8
A
196 202parallel
Strand 9
A
227 232parallel
Strand 10
C
227 232anti-parallel
Strand 11
C
196 202parallel
Strand 12
C
148 152parallel
Strand 13
C
120 126parallel
Strand 14
C
51 56parallel
Strand 15
C
83 88parallel
Strand 16
C
39 45anti-parallel
Strand 17
C
1 8anti-parallel
Strand 18
C
15 19anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
1 8anti-parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
83 88anti-parallel
Strand 5
B
51 56parallel
Strand 6
B
120 126parallel
Strand 7
B
148 152parallel
Strand 8
B
196 202parallel
Strand 9
B
227 232parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 19first strand
Strand 2
D
3 8anti-parallel
Strand 3
D
39 43anti-parallel
Strand 4
D
83 88anti-parallel
Strand 5
D
51 56parallel
Strand 6
D
120 126parallel
Strand 7
D
148 152parallel
Strand 8
D
196 202parallel
Strand 9
D
227 232parallel
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