Analysis of interatomic Contacts of Structural Units in PDB entry:
7DWM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DWM entry

There are 2 chains in PDB entry 7DWM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 235
B
 GLU 5LEU 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7DWM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 19Right-handed alpha
Helix 2
AA2
A
38 45Right-handed alpha
Helix 3
AA3
A
62 66Right-handed 310
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
124 137Right-handed alpha
Helix 6
AA6
A
159 170Right-handed alpha
Helix 7
AA7
A
174 183Right-handed alpha
Helix 8
AA8
A
185 201Right-handed alpha
Helix 9
AA9
A
204 215Right-handed alpha
Helix 10
AB1
A
216 220Right-handed 310
Helix 11
AB2
A
222 226Right-handed 310
Helix 12
AB3
B
6 19Right-handed alpha
Helix 13
AB4
B
38 45Right-handed alpha
Helix 14
AB5
B
56 60Right-handed 310
Helix 15
AB6
B
62 66Right-handed 310
Helix 16
AB7
B
67 78Right-handed alpha
Helix 17
AB8
B
124 139Right-handed alpha
Helix 18
AB9
B
159 170Right-handed alpha
Helix 19
AC1
B
174 183Right-handed alpha
Helix 20
AC2
B
185 201Right-handed alpha
Helix 21
AC3
B
204 215Right-handed alpha
Helix 22
AC4
B
216 220Right-handed 310
Helix 23
AC5
B
222 227Right-handed 310
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There are 2 sheets in PDB entry 7DWM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
25 29anti-parallel
Strand 3
A
116 123anti-parallel
Strand 4
A
96 107anti-parallel
Strand 5
A
85 93anti-parallel
Strand 6
A
230 233anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
25 29anti-parallel
Strand 3
B
114 123anti-parallel
Strand 4
B
96 108anti-parallel
Strand 5
B
85 93anti-parallel
Strand 6
B
230 233anti-parallel
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