Analysis of interatomic Contacts of Structural Units in PDB entry:
7DWQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DWQ entry

There are 10 chains in PDB entry 7DWQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 4	HIS 97
A	VAL 28	GLY 753
B	LYS 4	GLY 736
C	SER 2	TYR 81
E	VAL 2	ASN 59
F	GLY 26	ASP 128
J	ALA 21	ARG 41
L	LYS 7	ALA 150
M	MET 1	SER 30
W	ASP 4	GLU 31

There are 79 helices in PDB entry 7DWQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	20	26	Right-handed alpha
Helix 2	AA2	D	62	73	Right-handed alpha
Helix 3	AA3	D	74	78	Right-handed 310
Helix 4	AA4	A	45	55	Right-handed alpha
Helix 5	AA5	A	58	63	Right-handed alpha
Helix 6	AA6	A	65	98	Right-handed alpha
Helix 7	AA7	A	100	107	Right-handed alpha
Helix 8	AA8	A	123	128	Right-handed 310
Helix 9	AA9	A	143	151	Right-handed alpha
Helix 10	AB1	A	155	183	Right-handed alpha
Helix 11	AB2	A	187	192	Right-handed alpha
Helix 12	AB3	A	193	204	Right-handed alpha
Helix 13	AB4	A	206	220	Right-handed alpha
Helix 14	AB5	A	220	230	Right-handed alpha
Helix 15	AB6	A	239	246	Right-handed alpha
Helix 16	AB7	A	247	254	Right-handed alpha
Helix 17	AB8	A	255	259	Right-handed 310
Helix 18	AB9	A	268	273	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	327	Right-handed alpha
Helix 21	AC3	A	340	347	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	416	Right-handed alpha
Helix 24	AC6	A	425	433	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	481	493	Right-handed alpha
Helix 27	AC9	A	530	558	Right-handed alpha
Helix 28	AD1	A	566	571	Right-handed alpha
Helix 29	AD2	A	588	619	Right-handed alpha
Helix 30	AD3	A	636	641	Right-handed alpha
Helix 31	AD4	A	643	651	Right-handed alpha
Helix 32	AD5	A	656	661	Right-handed alpha
Helix 33	AD6	A	667	689	Right-handed alpha
Helix 34	AD7	A	691	709	Right-handed alpha
Helix 35	AD8	A	721	753	Right-handed alpha
Helix 36	AD9	B	18	27	Right-handed alpha
Helix 37	AE1	B	30	34	Right-handed 310
Helix 38	AE2	B	38	72	Right-handed alpha
Helix 39	AE3	B	73	80	Right-handed alpha
Helix 40	AE4	B	97	104	Right-handed alpha
Helix 41	AE5	B	119	128	Right-handed alpha
Helix 42	AE6	B	131	156	Right-handed alpha
Helix 43	AE7	B	164	170	Right-handed alpha
Helix 44	AE8	B	170	197	Right-handed alpha
Helix 45	AE9	B	197	204	Right-handed alpha
Helix 46	AF1	B	222	227	Right-handed 310
Helix 47	AF2	B	229	235	Right-handed 310
Helix 48	AF3	B	269	290	Right-handed alpha
Helix 49	AF4	B	321	326	Right-handed alpha
Helix 50	AF5	B	329	355	Right-handed alpha
Helix 51	AF6	B	364	397	Right-handed alpha
Helix 52	AF7	B	406	414	Right-handed alpha
Helix 53	AF8	B	414	446	Right-handed alpha
Helix 54	AF9	B	448	452	Right-handed 310
Helix 55	AG1	B	457	466	Right-handed alpha
Helix 56	AG2	B	516	543	Right-handed alpha
Helix 57	AG3	B	574	606	Right-handed alpha
Helix 58	AG4	B	609	616	Right-handed alpha
Helix 59	AG5	B	618	626	Right-handed alpha
Helix 60	AG6	B	626	631	Right-handed alpha
Helix 61	AG7	B	646	662	Right-handed alpha
Helix 62	AG8	B	663	669	Right-handed alpha
Helix 63	AG9	B	670	687	Right-handed alpha
Helix 64	AH1	B	704	733	Right-handed alpha
Helix 65	AH2	C	15	21	Right-handed alpha
Helix 66	AH3	C	44	48	Right-handed 310
Helix 67	AH4	C	52	58	Right-handed alpha
Helix 68	AH5	F	34	42	Right-handed alpha
Helix 69	AH6	F	54	62	Right-handed alpha
Helix 70	AH7	F	87	112	Right-handed alpha
Helix 71	AH8	F	119	126	Right-handed alpha
Helix 72	AH9	J	22	41	Right-handed alpha
Helix 73	AI1	L	19	24	Right-handed alpha
Helix 74	AI2	L	24	33	Right-handed alpha
Helix 75	AI3	L	42	65	Right-handed alpha
Helix 76	AI4	L	72	99	Right-handed alpha
Helix 77	AI5	L	119	149	Right-handed alpha
Helix 78	AI6	M	4	30	Right-handed alpha
Helix 79	AI7	W	5	30	Right-handed alpha

There are 11 sheets in PDB entry 7DWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	60	first strand
Strand 2	D	28	35	anti-parallel
Strand 3	D	83	87	anti-parallel
Strand 4	D	93	95	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	42	first strand
Strand 2	D	48	51	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	135	139	anti-parallel
Strand 3	A	129	132	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	518	first strand
Strand 2	A	521	524	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	623	first strand
Strand 2	A	629	631	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	639	first strand
Strand 2	B	642	643	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	9	first strand
Strand 2	E	21	27	anti-parallel
Strand 3	E	36	39	anti-parallel
Strand 4	E	57	58	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	65	66	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DWQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DWQ