Analysis of interatomic Contacts of Structural Units in PDB entry:
7DXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DXP entry

There are 2 chains in PDB entry 7DXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 23ASP 497
B
 ALA 22ASP 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 7DXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 47Right-handed alpha
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
56 71Right-handed alpha
Helix 4
AA4
A
113 124Right-handed alpha
Helix 5
AA5
A
129 148Right-handed alpha
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
160 167Right-handed 310
Helix 8
AA8
A
176 184Right-handed alpha
Helix 9
AA9
A
185 201Right-handed alpha
Helix 10
AB1
A
212 230Right-handed alpha
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
249 263Right-handed alpha
Helix 13
AB4
A
277 287Right-handed alpha
Helix 14
AB5
A
290 295Right-handed alpha
Helix 15
AB6
A
301 309Right-handed alpha
Helix 16
AB7
A
321 334Right-handed alpha
Helix 17
AB8
A
340 349Right-handed alpha
Helix 18
AB9
A
354 358Right-handed 310
Helix 19
AC1
A
370 374Right-handed 310
Helix 20
AC2
A
439 451Right-handed alpha
Helix 21
AC3
B
23 47Right-handed alpha
Helix 22
AC4
B
50 55Right-handed alpha
Helix 23
AC5
B
56 71Right-handed alpha
Helix 24
AC6
B
113 124Right-handed alpha
Helix 25
AC7
B
129 148Right-handed alpha
Helix 26
AC8
B
150 157Right-handed alpha
Helix 27
AC9
B
160 167Right-handed 310
Helix 28
AD1
B
173 175Right-handed 310
Helix 29
AD2
B
176 184Right-handed alpha
Helix 30
AD3
B
185 203Right-handed alpha
Helix 31
AD4
B
204 207Right-handed 310
Helix 32
AD5
B
210 230Right-handed alpha
Helix 33
AD6
B
232 244Right-handed alpha
Helix 34
AD7
B
249 263Right-handed alpha
Helix 35
AD8
B
277 287Right-handed alpha
Helix 36
AD9
B
290 295Right-handed alpha
Helix 37
AE1
B
301 309Right-handed alpha
Helix 38
AE2
B
321 334Right-handed alpha
Helix 39
AE3
B
340 349Right-handed alpha
Helix 40
AE4
B
354 358Right-handed 310
Helix 41
AE5
B
370 374Right-handed 310
Helix 42
AE6
B
438 451Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 7DXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 100first strand
Strand 2
A
103 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
375 378anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 387first strand
Strand 2
A
463 465anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 100first strand
Strand 2
B
103 112anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
375 378anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 387first strand
Strand 2
B
463 465anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il