Analysis of interatomic Contacts of Structural Units in PDB entry:
7DYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DYE entry

There are 2 chains in PDB entry 7DYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 17PRO 494
B
 ALA 17PRO 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 7DYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
79 89Right-handed alpha
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
123 134Right-handed alpha
Helix 6
AA6
A
158 174Right-handed alpha
Helix 7
AA7
A
196 201Right-handed alpha
Helix 8
AA8
A
267 274Right-handed alpha
Helix 9
AA9
A
293 308Right-handed alpha
Helix 10
AB1
A
320 331Right-handed alpha
Helix 11
AB2
A
334 341Right-handed alpha
Helix 12
AB3
A
350 354Right-handed 310
Helix 13
AB4
A
355 371Right-handed alpha
Helix 14
AB5
A
379 384Right-handed alpha
Helix 15
AB6
A
388 406Right-handed alpha
Helix 16
AB7
B
27 32Right-handed alpha
Helix 17
AB8
B
51 63Right-handed alpha
Helix 18
AB9
B
79 88Right-handed alpha
Helix 19
AC1
B
89 91Right-handed 310
Helix 20
AC2
B
94 100Right-handed alpha
Helix 21
AC3
B
124 137Right-handed alpha
Helix 22
AC4
B
158 175Right-handed alpha
Helix 23
AC5
B
196 201Right-handed alpha
Helix 24
AC6
B
267 274Right-handed alpha
Helix 25
AC7
B
293 308Right-handed alpha
Helix 26
AC8
B
320 331Right-handed alpha
Helix 27
AC9
B
334 341Right-handed alpha
Helix 28
AD1
B
350 354Right-handed 310
Helix 29
AD2
B
355 371Right-handed alpha
Helix 30
AD3
B
379 384Right-handed alpha
Helix 31
AD4
B
388 406Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7DYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
71 75parallel
Strand 3
A
141 145parallel
Strand 4
A
177 181parallel
Strand 5
A
42 46parallel
Strand 6
A
203 211parallel
Strand 7
A
216 225anti-parallel
Strand 8
A
235 240anti-parallel
Strand 9
A
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
312 316parallel
Strand 3
A
374 378parallel
Strand 4
A
409 415parallel
Strand 5
A
283 288parallel
Strand 6
A
436 444parallel
Strand 7
A
449 458anti-parallel
Strand 8
A
468 473anti-parallel
Strand 9
A
476 482anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
36 37anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
72 75parallel
Strand 3
B
141 145parallel
Strand 4
B
177 183parallel
Strand 5
B
41 46parallel
Strand 6
B
203 211parallel
Strand 7
B
216 225anti-parallel
Strand 8
B
235 240anti-parallel
Strand 9
B
243 246anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
312 316parallel
Strand 3
B
374 378parallel
Strand 4
B
409 415parallel
Strand 5
B
283 288parallel
Strand 6
B
436 445parallel
Strand 7
B
448 458anti-parallel
Strand 8
B
468 473anti-parallel
Strand 9
B
476 482anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il