Analysis of interatomic Contacts of Structural Units in PDB entry:
7DYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DYJ entry

There are 2 chains in PDB entry 7DYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18ILE 497
B
 ILE 18ILE 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 7DYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
51 68Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
93 100Right-handed alpha
Helix 6
AA6
A
124 137Right-handed alpha
Helix 7
AA7
A
147 151Right-handed 310
Helix 8
AA8
A
157 173Right-handed alpha
Helix 9
AA9
A
196 201Right-handed alpha
Helix 10
AB1
A
267 274Right-handed alpha
Helix 11
AB2
A
293 307Right-handed alpha
Helix 12
AB3
A
320 331Right-handed alpha
Helix 13
AB4
A
334 341Right-handed alpha
Helix 14
AB5
A
355 371Right-handed alpha
Helix 15
AB6
A
379 385Right-handed alpha
Helix 16
AB7
A
388 406Right-handed alpha
Helix 17
AB8
A
420 427Right-handed alpha
Helix 18
AB9
A
429 433Right-handed 310
Helix 19
AC1
A
488 492Right-handed 310
Helix 20
AC2
B
27 32Right-handed alpha
Helix 21
AC3
B
51 68Right-handed alpha
Helix 22
AC4
B
79 87Right-handed alpha
Helix 23
AC5
B
88 90Right-handed 310
Helix 24
AC6
B
93 100Right-handed alpha
Helix 25
AC7
B
124 138Right-handed alpha
Helix 26
AC8
B
156 175Right-handed alpha
Helix 27
AC9
B
196 201Right-handed alpha
Helix 28
AD1
B
267 274Right-handed alpha
Helix 29
AD2
B
293 307Right-handed alpha
Helix 30
AD3
B
320 331Right-handed alpha
Helix 31
AD4
B
334 341Right-handed alpha
Helix 32
AD5
B
355 371Right-handed alpha
Helix 33
AD6
B
379 385Right-handed alpha
Helix 34
AD7
B
388 406Right-handed alpha
Helix 35
AD8
B
420 427Right-handed alpha
Helix 36
AD9
B
429 434Right-handed alpha
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There are 9 sheets in PDB entry 7DYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
36 37anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
71 75parallel
Strand 3
A
141 145parallel
Strand 4
A
177 181parallel
Strand 5
A
42 46parallel
Strand 6
A
203 212parallel
Strand 7
A
215 225anti-parallel
Strand 8
A
234 240anti-parallel
Strand 9
A
243 246anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 348first strand
Strand 2
A
312 316parallel
Strand 3
A
374 378parallel
Strand 4
A
409 415parallel
Strand 5
A
283 288parallel
Strand 6
A
436 445parallel
Strand 7
A
448 458anti-parallel
Strand 8
A
468 473anti-parallel
Strand 9
A
476 482anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 487first strand
Strand 2
A
495 496anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
36 37anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 106first strand
Strand 2
B
71 74parallel
Strand 3
B
141 144parallel
Strand 4
B
177 181parallel
Strand 5
B
42 45parallel
Strand 6
B
203 212parallel
Strand 7
B
215 225anti-parallel
Strand 8
B
234 240anti-parallel
Strand 9
B
243 246anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
278 279anti-parallel
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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
312 316parallel
Strand 3
B
374 378parallel
Strand 4
B
409 415parallel
Strand 5
B
283 288parallel
Strand 6
B
436 445parallel
Strand 7
B
448 458anti-parallel
Strand 8
B
468 473anti-parallel
Strand 9
B
476 482anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 487first strand
Strand 2
B
495 496anti-parallel
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