Analysis of interatomic Contacts of Structural Units in PDB entry:
7DYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DYK entry

There are 2 chains in PDB entry 7DYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 18ILE 497
B
 ILE 18ILE 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 7DYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
51 65Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
89 91Right-handed 310
Helix 5
AA5
A
93 99Right-handed alpha
Helix 6
AA6
A
124 138Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
157 173Right-handed alpha
Helix 9
AA9
A
267 274Right-handed alpha
Helix 10
AB1
A
293 308Right-handed alpha
Helix 11
AB2
A
320 331Right-handed alpha
Helix 12
AB3
A
334 341Right-handed alpha
Helix 13
AB4
A
355 371Right-handed alpha
Helix 14
AB5
A
380 385Right-handed alpha
Helix 15
AB6
A
388 406Right-handed alpha
Helix 16
AB7
A
420 428Right-handed alpha
Helix 17
AB8
A
488 492Right-handed 310
Helix 18
AB9
B
27 32Right-handed alpha
Helix 19
AC1
B
51 68Right-handed alpha
Helix 20
AC2
B
79 87Right-handed alpha
Helix 21
AC3
B
88 90Right-handed 310
Helix 22
AC4
B
124 138Right-handed alpha
Helix 23
AC5
B
156 175Right-handed alpha
Helix 24
AC6
B
196 201Right-handed alpha
Helix 25
AC7
B
267 274Right-handed alpha
Helix 26
AC8
B
293 308Right-handed alpha
Helix 27
AC9
B
320 331Right-handed alpha
Helix 28
AD1
B
334 341Right-handed alpha
Helix 29
AD2
B
355 371Right-handed alpha
Helix 30
AD3
B
379 384Right-handed alpha
Helix 31
AD4
B
388 406Right-handed alpha
Helix 32
AD5
B
420 427Right-handed alpha
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There are 11 sheets in PDB entry 7DYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
36 37anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 107first strand
Strand 2
A
71 75parallel
Strand 3
A
141 145parallel
Strand 4
A
177 183parallel
Strand 5
A
41 46parallel
Strand 6
A
203 207parallel
Strand 7
A
219 225anti-parallel
Strand 8
A
235 240anti-parallel
Strand 9
A
243 246anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
216 217anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
278 279anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 346first strand
Strand 2
A
312 316parallel
Strand 3
A
374 378parallel
Strand 4
A
409 415parallel
Strand 5
A
283 288parallel
Strand 6
A
436 445parallel
Strand 7
A
448 458anti-parallel
Strand 8
A
468 473anti-parallel
Strand 9
A
476 482anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
36 37anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
141 144parallel
Strand 3
B
178 183parallel
Strand 4
B
42 46parallel
Strand 5
B
203 207parallel
Strand 6
B
219 225anti-parallel
Strand 7
B
235 240anti-parallel
Strand 8
B
243 246anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
216 217anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
278 279anti-parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 346first strand
Strand 2
B
312 316parallel
Strand 3
B
374 378parallel
Strand 4
B
409 415parallel
Strand 5
B
283 288parallel
Strand 6
B
436 445parallel
Strand 7
B
448 458anti-parallel
Strand 8
B
468 473anti-parallel
Strand 9
B
476 482anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 487first strand
Strand 2
B
495 496anti-parallel
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