Analysis of interatomic Contacts of Structural Units in PDB entry:
7DYM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DYM entry

There are 2 chains in PDB entry 7DYM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11GLY 258
B
 THR 2GLY 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 7DYM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 98Right-handed 310
Helix 2
AA2
A
114 124Right-handed alpha
Helix 3
AA3
A
167 169Right-handed 310
Helix 4
AA4
A
170 179Right-handed alpha
Helix 5
AA5
A
179 188Right-handed alpha
Helix 6
AA6
A
203 216Right-handed alpha
Helix 7
AA7
A
232 255Right-handed alpha
Helix 8
AA8
B
17 23Right-handed alpha
Helix 9
AA9
B
25 41Right-handed alpha
Helix 10
AB1
B
42 48Right-handed 310
Helix 11
AB2
B
58 62Right-handed 310
Helix 12
AB3
B
68 76Right-handed 310
Helix 13
AB4
B
95 99Right-handed 310
Helix 14
AB5
B
120 128Right-handed alpha
Helix 15
AB6
B
130 146Right-handed alpha
Helix 16
AB7
B
157 163Right-handed alpha
Helix 17
AB8
B
183 187Right-handed 310
Helix 18
AB9
B
214 231Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 7DYM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
129 133anti-parallel
Strand 3
A
136 138anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 142first strand
Strand 2
A
147 152anti-parallel
Strand 3
A
196 201parallel
Strand 4
A
222 226parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 52first strand
Strand 2
B
85 90anti-parallel
Strand 3
B
102 107anti-parallel
Strand 4
B
115 119anti-parallel
Strand 5
B
10 16anti-parallel
Strand 6
B
149 156anti-parallel
Strand 7
B
175 178anti-parallel
Strand 8
B
200 205anti-parallel
Strand 9
B
191 196anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il