Analysis of interatomic Contacts of Structural Units in PDB entry:
7DYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DYR entry

There are 9 chains in PDB entry 7DYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Y
 MET 1VAL 248
Z
 GLU 13LEU 286
A
 ASP 4SER 78
B
 MET 1VAL 248
C
 GLU 13LEU 286
D
 ASP 4SER 78
E
 MET 1VAL 248
F
 GLU 13LEU 286
G
 ASP 4SER 78
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 7DYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
Y
4 25Right-handed alpha
Helix 2
AA2
Y
31 44Right-handed alpha
Helix 3
AA3
Y
45 61Right-handed alpha
Helix 4
AA4
Y
73 87Right-handed alpha
Helix 5
AA5
Y
91 98Right-handed alpha
Helix 6
AA6
Y
98 117Right-handed alpha
Helix 7
AA7
Y
117 129Right-handed alpha
Helix 8
AA8
Y
132 143Right-handed alpha
Helix 9
AA9
Y
143 161Right-handed alpha
Helix 10
AB1
Y
165 171Right-handed alpha
Helix 11
AB2
Y
176 202Right-handed alpha
Helix 12
AB3
Y
207 220Right-handed alpha
Helix 13
AB4
Y
223 241Right-handed alpha
Helix 14
AB5
Z
18 28Right-handed alpha
Helix 15
AB6
Z
29 31Right-handed 310
Helix 16
AB7
Z
41 49Right-handed alpha
Helix 17
AB8
Z
49 57Right-handed alpha
Helix 18
AB9
Z
62 72Right-handed alpha
Helix 19
AC1
Z
82 99Right-handed alpha
Helix 20
AC2
Z
106 127Right-handed alpha
Helix 21
AC3
Z
129 145Right-handed alpha
Helix 22
AC4
Z
147 180Right-handed alpha
Helix 23
AC5
Z
181 183Right-handed 310
Helix 24
AC6
Z
186 211Right-handed alpha
Helix 25
AC7
Z
234 242Right-handed alpha
Helix 26
AC8
Z
244 260Right-handed alpha
Helix 27
AC9
Z
263 281Right-handed alpha
Helix 28
AD1
A
5 24Right-handed alpha
Helix 29
AD2
A
28 52Right-handed alpha
Helix 30
AD3
B
4 25Right-handed alpha
Helix 31
AD4
B
31 44Right-handed alpha
Helix 32
AD5
B
45 61Right-handed alpha
Helix 33
AD6
B
73 87Right-handed alpha
Helix 34
AD7
B
91 98Right-handed alpha
Helix 35
AD8
B
98 117Right-handed alpha
Helix 36
AD9
B
117 129Right-handed alpha
Helix 37
AE1
B
132 143Right-handed alpha
Helix 38
AE2
B
143 161Right-handed alpha
Helix 39
AE3
B
165 171Right-handed alpha
Helix 40
AE4
B
176 202Right-handed alpha
Helix 41
AE5
B
207 220Right-handed alpha
Helix 42
AE6
B
223 241Right-handed alpha
Helix 43
AE7
C
18 28Right-handed alpha
Helix 44
AE8
C
29 31Right-handed 310
Helix 45
AE9
C
41 49Right-handed alpha
Helix 46
AF1
C
49 57Right-handed alpha
Helix 47
AF2
C
62 72Right-handed alpha
Helix 48
AF3
C
82 99Right-handed alpha
Helix 49
AF4
C
106 127Right-handed alpha
Helix 50
AF5
C
129 145Right-handed alpha
Helix 51
AF6
C
147 180Right-handed alpha
Helix 52
AF7
C
181 183Right-handed 310
Helix 53
AF8
C
186 211Right-handed alpha
Helix 54
AF9
C
234 242Right-handed alpha
Helix 55
AG1
C
244 260Right-handed alpha
Helix 56
AG2
C
263 281Right-handed alpha
Helix 57
AG3
D
5 24Right-handed alpha
Helix 58
AG4
D
28 52Right-handed alpha
Helix 59
AG5
E
4 25Right-handed alpha
Helix 60
AG6
E
31 44Right-handed alpha
Helix 61
AG7
E
45 61Right-handed alpha
Helix 62
AG8
E
73 87Right-handed alpha
Helix 63
AG9
E
91 98Right-handed alpha
Helix 64
AH1
E
98 117Right-handed alpha
Helix 65
AH2
E
117 129Right-handed alpha
Helix 66
AH3
E
132 143Right-handed alpha
Helix 67
AH4
E
143 161Right-handed alpha
Helix 68
AH5
E
165 171Right-handed alpha
Helix 69
AH6
E
176 202Right-handed alpha
Helix 70
AH7
E
207 220Right-handed alpha
Helix 71
AH8
E
223 241Right-handed alpha
Helix 72
AH9
F
18 28Right-handed alpha
Helix 73
AI1
F
29 31Right-handed 310
Helix 74
AI2
F
41 49Right-handed alpha
Helix 75
AI3
F
49 57Right-handed alpha
Helix 76
AI4
F
62 72Right-handed alpha
Helix 77
AI5
F
82 99Right-handed alpha
Helix 78
AI6
F
106 127Right-handed alpha
Helix 79
AI7
F
129 145Right-handed alpha
Helix 80
AI8
F
147 180Right-handed alpha
Helix 81
AI9
F
181 183Right-handed 310
Helix 82
AJ1
F
186 211Right-handed alpha
Helix 83
AJ2
F
234 242Right-handed alpha
Helix 84
AJ3
F
244 260Right-handed alpha
Helix 85
AJ4
F
263 281Right-handed alpha
Helix 86
AJ5
G
5 24Right-handed alpha
Helix 87
AJ6
G
28 52Right-handed alpha
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There are 3 sheets in PDB entry 7DYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
Z
218 221first strand
Strand 2
Z
231 233anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
218 221first strand
Strand 2
C
231 233anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
218 221first strand
Strand 2
F
231 233anti-parallel
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