Analysis of interatomic Contacts of Structural Units in PDB entry:
7DZ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7DZ8 entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 30 chains in PDB entry 7DZ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 11	GLY 751
B	ALA 2	PHE 734
C	ALA 2	TYR 81
D	TRP 53	GLU 195
E	GLU 34	ALA 96
F	ASP 63	ARG 227
G	LEU 32	LEU 125
H	LYS 31	LEU 130
I	ALA 63	PRO 104
J	MET 1	PHE 41
K	GLY 28	LEU 113
L	LYS 38	SER 196
O	GLU 30	TRP 126
1	LYS 35	PHE 228
a	LYS 35	PHE 228
2	ARG 28	ASN 244
3	GLN 44	ALA 263
4	ASP 55	LEU 264
5	ASP 31	GLN 257
6	SER 28	PRO 257
7	VAL 29	ALA 241
8	ARG 28	PHE 243
9	ARG 28	LEU 210
X	ALA 29	ALA 249
Y	ILE 38	SER 256
Z	GLY 37	ALA 257
U	GLU 39	ALA 257
V	LYS 31	LYS 32
V	ILE 34	GLN 268
W	ILE 30	ALA 249

There are226 helices in PDB entry 7DZ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	29	Right-handed 310
Helix 2	AA2	A	38	42	Right-handed 310
Helix 3	AA3	A	46	55	Right-handed alpha
Helix 4	AA4	A	58	63	Right-handed alpha
Helix 5	AA5	A	65	98	Right-handed alpha
Helix 6	AA6	A	100	107	Right-handed alpha
Helix 7	AA7	A	123	128	Right-handed 310
Helix 8	AA8	A	143	152	Right-handed alpha
Helix 9	AA9	A	155	183	Right-handed alpha
Helix 10	AB1	A	187	192	Right-handed alpha
Helix 11	AB2	A	193	204	Right-handed alpha
Helix 12	AB3	A	206	220	Right-handed alpha
Helix 13	AB4	A	220	230	Right-handed alpha
Helix 14	AB5	A	239	246	Right-handed alpha
Helix 15	AB6	A	246	254	Right-handed alpha
Helix 16	AB7	A	255	259	Right-handed 310
Helix 17	AB8	A	261	266	Right-handed alpha
Helix 18	AB9	A	268	273	Right-handed 310
Helix 19	AC1	A	290	309	Right-handed alpha
Helix 20	AC2	A	321	328	Right-handed alpha
Helix 21	AC3	A	340	346	Right-handed alpha
Helix 22	AC4	A	348	374	Right-handed alpha
Helix 23	AC5	A	383	415	Right-handed alpha
Helix 24	AC6	A	425	432	Right-handed alpha
Helix 25	AC7	A	433	465	Right-handed alpha
Helix 26	AC8	A	467	471	Right-handed 310
Helix 27	AC9	A	481	493	Right-handed alpha
Helix 28	AD1	A	493	498	Right-handed alpha
Helix 29	AD2	A	507	511	Right-handed 310
Helix 30	AD3	A	529	556	Right-handed alpha
Helix 31	AD4	A	565	570	Right-handed alpha
Helix 32	AD5	A	587	618	Right-handed alpha
Helix 33	AD6	A	634	639	Right-handed alpha
Helix 34	AD7	A	641	649	Right-handed alpha
Helix 35	AD8	A	654	659	Right-handed alpha
Helix 36	AD9	A	665	687	Right-handed alpha
Helix 37	AE1	A	689	707	Right-handed alpha
Helix 38	AE2	A	719	751	Right-handed alpha
Helix 39	AE3	B	10	15	Right-handed alpha
Helix 40	AE4	B	19	27	Right-handed alpha
Helix 41	AE5	B	31	35	Right-handed 310
Helix 42	AE6	B	39	73	Right-handed alpha
Helix 43	AE7	B	74	79	Right-handed alpha
Helix 44	AE8	B	98	105	Right-handed alpha
Helix 45	AE9	B	120	128	Right-handed alpha
Helix 46	AF1	B	132	157	Right-handed alpha
Helix 47	AF2	B	165	171	Right-handed alpha
Helix 48	AF3	B	172	182	Right-handed alpha
Helix 49	AF4	B	184	198	Right-handed alpha
Helix 50	AF5	B	198	204	Right-handed alpha
Helix 51	AF6	B	223	228	Right-handed alpha
Helix 52	AF7	B	230	236	Right-handed 310
Helix 53	AF8	B	270	289	Right-handed alpha
Helix 54	AF9	B	301	309	Right-handed alpha
Helix 55	AG1	B	311	315	Right-handed 310
Helix 56	AG2	B	323	329	Right-handed alpha
Helix 57	AG3	B	330	354	Right-handed alpha
Helix 58	AG4	B	365	398	Right-handed alpha
Helix 59	AG5	B	407	415	Right-handed alpha
Helix 60	AG6	B	415	447	Right-handed alpha
Helix 61	AG7	B	449	453	Right-handed 310
Helix 62	AG8	B	458	468	Right-handed alpha
Helix 63	AG9	B	484	490	Right-handed alpha
Helix 64	AH1	B	494	503	Right-handed alpha
Helix 65	AH2	B	514	541	Right-handed alpha
Helix 66	AH3	B	550	555	Right-handed 310
Helix 67	AH4	B	572	604	Right-handed alpha
Helix 68	AH5	B	606	614	Right-handed alpha
Helix 69	AH6	B	616	626	Right-handed alpha
Helix 70	AH7	B	629	634	Right-handed alpha
Helix 71	AH8	B	644	667	Right-handed alpha
Helix 72	AH9	B	670	686	Right-handed alpha
Helix 73	AI1	B	702	732	Right-handed alpha
Helix 74	AI2	C	15	21	Right-handed alpha
Helix 75	AI3	C	44	48	Right-handed 310
Helix 76	AI4	C	52	58	Right-handed alpha
Helix 77	AI5	D	75	81	Right-handed alpha
Helix 78	AI6	D	117	131	Right-handed alpha
Helix 79	AI7	F	73	92	Right-handed alpha
Helix 80	AI8	F	98	121	Right-handed alpha
Helix 81	AI9	F	149	175	Right-handed alpha
Helix 82	AJ1	F	181	186	Right-handed alpha
Helix 83	AJ2	F	188	199	Right-handed alpha
Helix 84	AJ3	F	201	212	Right-handed alpha
Helix 85	AJ4	G	33	51	Right-handed alpha
Helix 86	AJ5	G	54	62	Right-handed alpha
Helix 87	AJ6	G	75	80	Right-handed alpha
Helix 88	AJ7	G	96	120	Right-handed alpha
Helix 89	AJ8	H	43	49	Right-handed alpha
Helix 90	AJ9	H	63	73	Right-handed alpha
Helix 91	AK1	H	74	78	Right-handed 310
Helix 92	AK2	H	79	101	Right-handed alpha
Helix 93	AK3	H	101	106	Right-handed alpha
Helix 94	AK4	H	108	113	Right-handed alpha
Helix 95	AK5	I	74	86	Right-handed alpha
Helix 96	AK6	I	86	100	Right-handed alpha
Helix 97	AK7	J	2	8	Right-handed alpha
Helix 98	AK8	J	10	33	Right-handed alpha
Helix 99	AK9	K	32	51	Right-handed alpha
Helix 100	AL1	K	85	110	Right-handed alpha
Helix 101	AL2	L	45	49	Right-handed 310
Helix 102	AL3	L	57	62	Right-handed alpha
Helix 103	AL4	L	62	71	Right-handed alpha
Helix 104	AL5	L	72	76	Right-handed 310
Helix 105	AL6	L	80	96	Right-handed alpha
Helix 106	AL7	L	96	104	Right-handed alpha
Helix 107	AL8	L	111	140	Right-handed alpha
Helix 108	AL9	L	159	162	Right-handed 310
Helix 109	AM1	L	163	192	Right-handed alpha
Helix 110	AM2	O	45	57	Right-handed alpha
Helix 111	AM3	O	58	61	Right-handed 310
Helix 112	AM4	O	63	67	Right-handed 310
Helix 113	AM5	O	70	85	Right-handed alpha
Helix 114	AM6	O	95	122	Right-handed alpha
Helix 115	AM7	1	67	98	Right-handed alpha
Helix 116	AM8	1	105	110	Right-handed 310
Helix 117	AM9	1	126	147	Right-handed alpha
Helix 118	AN1	1	167	198	Right-handed alpha
Helix 119	AN2	1	201	212	Right-handed alpha
Helix 120	AN3	a	67	98	Right-handed alpha
Helix 121	AN4	a	105	110	Right-handed 310
Helix 122	AN5	a	126	147	Right-handed alpha
Helix 123	AN6	a	167	198	Right-handed alpha
Helix 124	AN7	a	201	212	Right-handed alpha
Helix 125	AN8	2	59	90	Right-handed alpha
Helix 126	AN9	2	97	101	Right-handed 310
Helix 127	AO1	2	106	132	Right-handed alpha
Helix 128	AO2	2	150	177	Right-handed alpha
Helix 129	AO3	2	181	192	Right-handed alpha
Helix 130	AO4	2	197	201	Right-handed 310
Helix 131	AO5	2	203	228	Right-handed alpha
Helix 132	AO6	2	237	241	Right-handed 310
Helix 133	AO7	3	52	57	Right-handed alpha
Helix 134	AO8	3	83	113	Right-handed alpha
Helix 135	AO9	3	124	128	Right-handed 310
Helix 136	AP1	3	143	168	Right-handed alpha
Helix 137	AP2	3	179	184	Right-handed 310
Helix 138	AP3	3	206	238	Right-handed alpha
Helix 139	AP4	3	241	252	Right-handed alpha
Helix 140	AP5	3	259	263	Right-handed 310
Helix 141	AP6	4	85	88	Right-handed 310
Helix 142	AP7	4	89	124	Right-handed alpha
Helix 143	AP8	4	145	170	Right-handed alpha
Helix 144	AP9	4	195	199	Right-handed 310
Helix 145	AQ1	4	207	236	Right-handed alpha
Helix 146	AQ2	4	239	250	Right-handed alpha
Helix 147	AQ3	4	255	264	Right-handed alpha
Helix 148	AQ4	5	63	95	Right-handed alpha
Helix 149	AQ5	5	99	103	Right-handed 310
Helix 150	AQ6	5	105	109	Right-handed 310
Helix 151	AQ7	5	117	142	Right-handed alpha
Helix 152	AQ8	5	166	170	Right-handed 310
Helix 153	AQ9	5	178	207	Right-handed alpha
Helix 154	AR1	5	210	221	Right-handed alpha
Helix 155	AR2	6	60	92	Right-handed alpha
Helix 156	AR3	6	109	134	Right-handed alpha
Helix 157	AR4	6	158	162	Right-handed 310
Helix 158	AR5	6	168	197	Right-handed alpha
Helix 159	AR6	6	200	211	Right-handed alpha
Helix 160	AR7	6	212	215	Right-handed 310
Helix 161	AR8	6	216	220	Right-handed 310
Helix 162	AR9	7	61	95	Right-handed alpha
Helix 163	AS1	7	104	113	Right-handed alpha
Helix 164	AS2	7	116	141	Right-handed alpha
Helix 165	AS3	7	166	171	Right-handed alpha
Helix 166	AS4	7	179	211	Right-handed alpha
Helix 167	AS5	7	214	225	Right-handed alpha
Helix 168	AS6	7	230	234	Right-handed 310
Helix 169	AS7	8	38	42	Right-handed 310
Helix 170	AS8	8	63	97	Right-handed alpha
Helix 171	AS9	8	107	115	Right-handed alpha
Helix 172	AT1	8	119	144	Right-handed alpha
Helix 173	AT2	8	146	150	Right-handed 310
Helix 174	AT3	8	156	161	Right-handed 310
Helix 175	AT4	8	171	175	Right-handed 310
Helix 176	AT5	8	185	214	Right-handed alpha
Helix 177	AT6	8	217	228	Right-handed alpha
Helix 178	AT7	9	61	90	Right-handed alpha
Helix 179	AT8	9	107	128	Right-handed alpha
Helix 180	AT9	9	151	176	Right-handed alpha
Helix 181	AU1	9	182	193	Right-handed alpha
Helix 182	AU2	9	198	203	Right-handed alpha
Helix 183	AU3	9	205	210	Right-handed alpha
Helix 184	AU4	X	41	45	Right-handed 310
Helix 185	AU5	X	71	96	Right-handed alpha
Helix 186	AU6	X	96	106	Right-handed alpha
Helix 187	AU7	X	117	123	Right-handed 310
Helix 188	AU8	X	140	161	Right-handed alpha
Helix 189	AU9	X	175	179	Right-handed 310
Helix 190	AV1	X	186	217	Right-handed alpha
Helix 191	AV2	X	221	232	Right-handed alpha
Helix 192	AV3	X	237	242	Right-handed 310
Helix 193	AV4	Y	79	112	Right-handed alpha
Helix 194	AV5	Y	148	169	Right-handed alpha
Helix 195	AV6	Y	194	227	Right-handed alpha
Helix 196	AV7	Y	229	240	Right-handed alpha
Helix 197	AV8	Y	245	250	Right-handed 310
Helix 198	AV9	Z	79	114	Right-handed alpha
Helix 199	AW1	Z	121	125	Right-handed 310
Helix 200	AW2	Z	126	131	Right-handed 310
Helix 201	AW3	Z	148	169	Right-handed alpha
Helix 202	AW4	Z	194	227	Right-handed alpha
Helix 203	AW5	Z	229	240	Right-handed alpha
Helix 204	AW6	Z	245	250	Right-handed 310
Helix 205	AW7	U	49	53	Right-handed 310
Helix 206	AW8	U	79	114	Right-handed alpha
Helix 207	AW9	U	121	129	Right-handed 310
Helix 208	AX1	U	148	169	Right-handed alpha
Helix 209	AX2	U	194	224	Right-handed alpha
Helix 210	AX3	U	229	240	Right-handed alpha
Helix 211	AX4	U	245	250	Right-handed 310
Helix 212	AX5	V	33	39	Right-handed alpha
Helix 213	AX6	V	61	65	Right-handed 310
Helix 214	AX7	V	90	125	Right-handed alpha
Helix 215	AX8	V	132	142	Right-handed 310
Helix 216	AX9	V	159	181	Right-handed alpha
Helix 217	AY1	V	206	238	Right-handed alpha
Helix 218	AY2	V	241	252	Right-handed alpha
Helix 219	AY3	V	261	265	Right-handed 310
Helix 220	AY4	W	41	46	Right-handed 310
Helix 221	AY5	W	71	106	Right-handed alpha
Helix 222	AY6	W	113	121	Right-handed 310
Helix 223	AY7	W	141	161	Right-handed alpha
Helix 224	AY8	W	186	217	Right-handed alpha
Helix 225	AY9	W	221	232	Right-handed alpha
Helix 226	AZ1	W	237	242	Right-handed 310

There are 17 sheets in PDB entry 7DZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	19	first strand
Strand 2	A	184	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	636	637	first strand
Strand 2	B	640	641	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	28	first strand
Strand 2	C	40	41	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	115	first strand
Strand 2	D	84	90	anti-parallel
Strand 3	D	137	141	anti-parallel
Strand 4	D	147	149	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	97	first strand
Strand 2	D	103	105	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	88	first strand
Strand 2	E	71	74	anti-parallel
Strand 3	E	56	62	anti-parallel
Strand 4	E	42	45	anti-parallel
Strand 5	E	93	95	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	69	first strand
Strand 2	F	124	125	anti-parallel
Strand 3	F	131	132	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	59	61	first strand
Strand 2	K	67	69	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	117	118	first strand
Strand 2	1	121	122	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	117	118	first strand
Strand 2	a	121	122	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	222	224	first strand
Strand 2	6	227	229	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	238	239	first strand
Strand 2	6	246	247	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7DZ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
7DZ8