Analysis of interatomic Contacts of Structural Units in PDB entry:
7DZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DZ8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 30 chains in PDB entry 7DZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 11GLY 751
B
ALA 2PHE 734
C
ALA 2TYR 81
D
TRP 53GLU 195
E
GLU 34ALA 96
F
ASP 63ARG 227
G
LEU 32LEU 125
H
LYS 31LEU 130
I
ALA 63PRO 104
J
MET 1PHE 41
K
GLY 28LEU 113
L
LYS 38SER 196
O
GLU 30TRP 126
1
LYS 35PHE 228
a
LYS 35PHE 228
2
ARG 28ASN 244
3
GLN 44ALA 263
4
ASP 55LEU 264
5
ASP 31GLN 257
6
SER 28PRO 257
7
VAL 29ALA 241
8
ARG 28PHE 243
9
ARG 28LEU 210
X
ALA 29ALA 249
Y
ILE 38SER 256
Z
GLY 37ALA 257
U
GLU 39ALA 257
V
LYS 31LYS 32
V
ILE 34GLN 268
W
ILE 30ALA 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are226 helices in PDB entry 7DZ8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
25 29Right-handed 310
Helix 2
AA2
A
38 42Right-handed 310
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
58 63Right-handed alpha
Helix 5
AA5
A
65 98Right-handed alpha
Helix 6
AA6
A
100 107Right-handed alpha
Helix 7
AA7
A
123 128Right-handed 310
Helix 8
AA8
A
143 152Right-handed alpha
Helix 9
AA9
A
155 183Right-handed alpha
Helix 10
AB1
A
187 192Right-handed alpha
Helix 11
AB2
A
193 204Right-handed alpha
Helix 12
AB3
A
206 220Right-handed alpha
Helix 13
AB4
A
220 230Right-handed alpha
Helix 14
AB5
A
239 246Right-handed alpha
Helix 15
AB6
A
246 254Right-handed alpha
Helix 16
AB7
A
255 259Right-handed 310
Helix 17
AB8
A
261 266Right-handed alpha
Helix 18
AB9
A
268 273Right-handed 310
Helix 19
AC1
A
290 309Right-handed alpha
Helix 20
AC2
A
321 328Right-handed alpha
Helix 21
AC3
A
340 346Right-handed alpha
Helix 22
AC4
A
348 374Right-handed alpha
Helix 23
AC5
A
383 415Right-handed alpha
Helix 24
AC6
A
425 432Right-handed alpha
Helix 25
AC7
A
433 465Right-handed alpha
Helix 26
AC8
A
467 471Right-handed 310
Helix 27
AC9
A
481 493Right-handed alpha
Helix 28
AD1
A
493 498Right-handed alpha
Helix 29
AD2
A
507 511Right-handed 310
Helix 30
AD3
A
529 556Right-handed alpha
Helix 31
AD4
A
565 570Right-handed alpha
Helix 32
AD5
A
587 618Right-handed alpha
Helix 33
AD6
A
634 639Right-handed alpha
Helix 34
AD7
A
641 649Right-handed alpha
Helix 35
AD8
A
654 659Right-handed alpha
Helix 36
AD9
A
665 687Right-handed alpha
Helix 37
AE1
A
689 707Right-handed alpha
Helix 38
AE2
A
719 751Right-handed alpha
Helix 39
AE3
B
10 15Right-handed alpha
Helix 40
AE4
B
19 27Right-handed alpha
Helix 41
AE5
B
31 35Right-handed 310
Helix 42
AE6
B
39 73Right-handed alpha
Helix 43
AE7
B
74 79Right-handed alpha
Helix 44
AE8
B
98 105Right-handed alpha
Helix 45
AE9
B
120 128Right-handed alpha
Helix 46
AF1
B
132 157Right-handed alpha
Helix 47
AF2
B
165 171Right-handed alpha
Helix 48
AF3
B
172 182Right-handed alpha
Helix 49
AF4
B
184 198Right-handed alpha
Helix 50
AF5
B
198 204Right-handed alpha
Helix 51
AF6
B
223 228Right-handed alpha
Helix 52
AF7
B
230 236Right-handed 310
Helix 53
AF8
B
270 289Right-handed alpha
Helix 54
AF9
B
301 309Right-handed alpha
Helix 55
AG1
B
311 315Right-handed 310
Helix 56
AG2
B
323 329Right-handed alpha
Helix 57
AG3
B
330 354Right-handed alpha
Helix 58
AG4
B
365 398Right-handed alpha
Helix 59
AG5
B
407 415Right-handed alpha
Helix 60
AG6
B
415 447Right-handed alpha
Helix 61
AG7
B
449 453Right-handed 310
Helix 62
AG8
B
458 468Right-handed alpha
Helix 63
AG9
B
484 490Right-handed alpha
Helix 64
AH1
B
494 503Right-handed alpha
Helix 65
AH2
B
514 541Right-handed alpha
Helix 66
AH3
B
550 555Right-handed 310
Helix 67
AH4
B
572 604Right-handed alpha
Helix 68
AH5
B
606 614Right-handed alpha
Helix 69
AH6
B
616 626Right-handed alpha
Helix 70
AH7
B
629 634Right-handed alpha
Helix 71
AH8
B
644 667Right-handed alpha
Helix 72
AH9
B
670 686Right-handed alpha
Helix 73
AI1
B
702 732Right-handed alpha
Helix 74
AI2
C
15 21Right-handed alpha
Helix 75
AI3
C
44 48Right-handed 310
Helix 76
AI4
C
52 58Right-handed alpha
Helix 77
AI5
D
75 81Right-handed alpha
Helix 78
AI6
D
117 131Right-handed alpha
Helix 79
AI7
F
73 92Right-handed alpha
Helix 80
AI8
F
98 121Right-handed alpha
Helix 81
AI9
F
149 175Right-handed alpha
Helix 82
AJ1
F
181 186Right-handed alpha
Helix 83
AJ2
F
188 199Right-handed alpha
Helix 84
AJ3
F
201 212Right-handed alpha
Helix 85
AJ4
G
33 51Right-handed alpha
Helix 86
AJ5
G
54 62Right-handed alpha
Helix 87
AJ6
G
75 80Right-handed alpha
Helix 88
AJ7
G
96 120Right-handed alpha
Helix 89
AJ8
H
43 49Right-handed alpha
Helix 90
AJ9
H
63 73Right-handed alpha
Helix 91
AK1
H
74 78Right-handed 310
Helix 92
AK2
H
79 101Right-handed alpha
Helix 93
AK3
H
101 106Right-handed alpha
Helix 94
AK4
H
108 113Right-handed alpha
Helix 95
AK5
I
74 86Right-handed alpha
Helix 96
AK6
I
86 100Right-handed alpha
Helix 97
AK7
J
2 8Right-handed alpha
Helix 98
AK8
J
10 33Right-handed alpha
Helix 99
AK9
K
32 51Right-handed alpha
Helix 100
AL1
K
85 110Right-handed alpha
Helix 101
AL2
L
45 49Right-handed 310
Helix 102
AL3
L
57 62Right-handed alpha
Helix 103
AL4
L
62 71Right-handed alpha
Helix 104
AL5
L
72 76Right-handed 310
Helix 105
AL6
L
80 96Right-handed alpha
Helix 106
AL7
L
96 104Right-handed alpha
Helix 107
AL8
L
111 140Right-handed alpha
Helix 108
AL9
L
159 162Right-handed 310
Helix 109
AM1
L
163 192Right-handed alpha
Helix 110
AM2
O
45 57Right-handed alpha
Helix 111
AM3
O
58 61Right-handed 310
Helix 112
AM4
O
63 67Right-handed 310
Helix 113
AM5
O
70 85Right-handed alpha
Helix 114
AM6
O
95 122Right-handed alpha
Helix 115
AM7
1
67 98Right-handed alpha
Helix 116
AM8
1
105 110Right-handed 310
Helix 117
AM9
1
126 147Right-handed alpha
Helix 118
AN1
1
167 198Right-handed alpha
Helix 119
AN2
1
201 212Right-handed alpha
Helix 120
AN3
a
67 98Right-handed alpha
Helix 121
AN4
a
105 110Right-handed 310
Helix 122
AN5
a
126 147Right-handed alpha
Helix 123
AN6
a
167 198Right-handed alpha
Helix 124
AN7
a
201 212Right-handed alpha
Helix 125
AN8
2
59 90Right-handed alpha
Helix 126
AN9
2
97 101Right-handed 310
Helix 127
AO1
2
106 132Right-handed alpha
Helix 128
AO2
2
150 177Right-handed alpha
Helix 129
AO3
2
181 192Right-handed alpha
Helix 130
AO4
2
197 201Right-handed 310
Helix 131
AO5
2
203 228Right-handed alpha
Helix 132
AO6
2
237 241Right-handed 310
Helix 133
AO7
3
52 57Right-handed alpha
Helix 134
AO8
3
83 113Right-handed alpha
Helix 135
AO9
3
124 128Right-handed 310
Helix 136
AP1
3
143 168Right-handed alpha
Helix 137
AP2
3
179 184Right-handed 310
Helix 138
AP3
3
206 238Right-handed alpha
Helix 139
AP4
3
241 252Right-handed alpha
Helix 140
AP5
3
259 263Right-handed 310
Helix 141
AP6
4
85 88Right-handed 310
Helix 142
AP7
4
89 124Right-handed alpha
Helix 143
AP8
4
145 170Right-handed alpha
Helix 144
AP9
4
195 199Right-handed 310
Helix 145
AQ1
4
207 236Right-handed alpha
Helix 146
AQ2
4
239 250Right-handed alpha
Helix 147
AQ3
4
255 264Right-handed alpha
Helix 148
AQ4
5
63 95Right-handed alpha
Helix 149
AQ5
5
99 103Right-handed 310
Helix 150
AQ6
5
105 109Right-handed 310
Helix 151
AQ7
5
117 142Right-handed alpha
Helix 152
AQ8
5
166 170Right-handed 310
Helix 153
AQ9
5
178 207Right-handed alpha
Helix 154
AR1
5
210 221Right-handed alpha
Helix 155
AR2
6
60 92Right-handed alpha
Helix 156
AR3
6
109 134Right-handed alpha
Helix 157
AR4
6
158 162Right-handed 310
Helix 158
AR5
6
168 197Right-handed alpha
Helix 159
AR6
6
200 211Right-handed alpha
Helix 160
AR7
6
212 215Right-handed 310
Helix 161
AR8
6
216 220Right-handed 310
Helix 162
AR9
7
61 95Right-handed alpha
Helix 163
AS1
7
104 113Right-handed alpha
Helix 164
AS2
7
116 141Right-handed alpha
Helix 165
AS3
7
166 171Right-handed alpha
Helix 166
AS4
7
179 211Right-handed alpha
Helix 167
AS5
7
214 225Right-handed alpha
Helix 168
AS6
7
230 234Right-handed 310
Helix 169
AS7
8
38 42Right-handed 310
Helix 170
AS8
8
63 97Right-handed alpha
Helix 171
AS9
8
107 115Right-handed alpha
Helix 172
AT1
8
119 144Right-handed alpha
Helix 173
AT2
8
146 150Right-handed 310
Helix 174
AT3
8
156 161Right-handed 310
Helix 175
AT4
8
171 175Right-handed 310
Helix 176
AT5
8
185 214Right-handed alpha
Helix 177
AT6
8
217 228Right-handed alpha
Helix 178
AT7
9
61 90Right-handed alpha
Helix 179
AT8
9
107 128Right-handed alpha
Helix 180
AT9
9
151 176Right-handed alpha
Helix 181
AU1
9
182 193Right-handed alpha
Helix 182
AU2
9
198 203Right-handed alpha
Helix 183
AU3
9
205 210Right-handed alpha
Helix 184
AU4
X
41 45Right-handed 310
Helix 185
AU5
X
71 96Right-handed alpha
Helix 186
AU6
X
96 106Right-handed alpha
Helix 187
AU7
X
117 123Right-handed 310
Helix 188
AU8
X
140 161Right-handed alpha
Helix 189
AU9
X
175 179Right-handed 310
Helix 190
AV1
X
186 217Right-handed alpha
Helix 191
AV2
X
221 232Right-handed alpha
Helix 192
AV3
X
237 242Right-handed 310
Helix 193
AV4
Y
79 112Right-handed alpha
Helix 194
AV5
Y
148 169Right-handed alpha
Helix 195
AV6
Y
194 227Right-handed alpha
Helix 196
AV7
Y
229 240Right-handed alpha
Helix 197
AV8
Y
245 250Right-handed 310
Helix 198
AV9
Z
79 114Right-handed alpha
Helix 199
AW1
Z
121 125Right-handed 310
Helix 200
AW2
Z
126 131Right-handed 310
Helix 201
AW3
Z
148 169Right-handed alpha
Helix 202
AW4
Z
194 227Right-handed alpha
Helix 203
AW5
Z
229 240Right-handed alpha
Helix 204
AW6
Z
245 250Right-handed 310
Helix 205
AW7
U
49 53Right-handed 310
Helix 206
AW8
U
79 114Right-handed alpha
Helix 207
AW9
U
121 129Right-handed 310
Helix 208
AX1
U
148 169Right-handed alpha
Helix 209
AX2
U
194 224Right-handed alpha
Helix 210
AX3
U
229 240Right-handed alpha
Helix 211
AX4
U
245 250Right-handed 310
Helix 212
AX5
V
33 39Right-handed alpha
Helix 213
AX6
V
61 65Right-handed 310
Helix 214
AX7
V
90 125Right-handed alpha
Helix 215
AX8
V
132 142Right-handed 310
Helix 216
AX9
V
159 181Right-handed alpha
Helix 217
AY1
V
206 238Right-handed alpha
Helix 218
AY2
V
241 252Right-handed alpha
Helix 219
AY3
V
261 265Right-handed 310
Helix 220
AY4
W
41 46Right-handed 310
Helix 221
AY5
W
71 106Right-handed alpha
Helix 222
AY6
W
113 121Right-handed 310
Helix 223
AY7
W
141 161Right-handed alpha
Helix 224
AY8
W
186 217Right-handed alpha
Helix 225
AY9
W
221 232Right-handed alpha
Helix 226
AZ1
W
237 242Right-handed 310
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There are 17 sheets in PDB entry 7DZ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 19first strand
Strand 2
A
184 186anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 116first strand
Strand 2
A
136 139anti-parallel
Strand 3
A
129 130anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
515 517first strand
Strand 2
A
520 523anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
620 622first strand
Strand 2
A
627 629anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
88 91first strand
Strand 2
B
114 116anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
636 637first strand
Strand 2
B
640 641anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
4 7first strand
Strand 2
C
65 68anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
27 28first strand
Strand 2
C
40 41anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
109 115first strand
Strand 2
D
84 90anti-parallel
Strand 3
D
137 141anti-parallel
Strand 4
D
147 149anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
95 97first strand
Strand 2
D
103 105anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
85 88first strand
Strand 2
E
71 74anti-parallel
Strand 3
E
56 62anti-parallel
Strand 4
E
42 45anti-parallel
Strand 5
E
93 95anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
68 69first strand
Strand 2
F
124 125anti-parallel
Strand 3
F
131 132anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
59 61first strand
Strand 2
K
67 69anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
1
117 118first strand
Strand 2
1
121 122anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
a
117 118first strand
Strand 2
a
121 122anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
222 224first strand
Strand 2
6
227 229anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
6
238 239first strand
Strand 2
6
246 247anti-parallel
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