Analysis of interatomic Contacts of Structural Units in PDB entry:
7DZ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DZ9 entry

There are 6 chains in PDB entry 7DZ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 260
B
 MET 1SER 260
D
 MET 1LYS 180
E
 MET 1LYS 23
F
 MET 1ASN 22
C
 MET 1LYS 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 7DZ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
33 35Right-handed 310
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
60 64Right-handed 310
Helix 5
AA5
A
65 68Right-handed 310
Helix 6
AA6
A
69 84Right-handed alpha
Helix 7
AA7
A
113 128Right-handed alpha
Helix 8
AA8
A
146 158Right-handed alpha
Helix 9
AA9
A
166 177Right-handed alpha
Helix 10
AB1
A
179 182Right-handed 310
Helix 11
AB2
A
183 188Right-handed alpha
Helix 12
AB3
A
202 205Right-handed 310
Helix 13
AB4
A
216 230Right-handed alpha
Helix 14
AB5
A
244 260Right-handed alpha
Helix 15
AB6
B
12 23Right-handed alpha
Helix 16
AB7
B
33 35Right-handed 310
Helix 17
AB8
B
39 48Right-handed alpha
Helix 18
AB9
B
60 64Right-handed 310
Helix 19
AC1
B
65 84Right-handed alpha
Helix 20
AC2
B
113 128Right-handed alpha
Helix 21
AC3
B
146 158Right-handed alpha
Helix 22
AC4
B
166 177Right-handed alpha
Helix 23
AC5
B
179 182Right-handed 310
Helix 24
AC6
B
183 188Right-handed alpha
Helix 25
AC7
B
202 205Right-handed 310
Helix 26
AC8
B
216 230Right-handed alpha
Helix 27
AC9
B
244 260Right-handed alpha
Helix 28
AD1
D
2 10Right-handed alpha
Helix 29
AD2
D
18 40Right-handed alpha
Helix 30
AD3
D
41 50Right-handed 310
Helix 31
AD4
D
51 65Right-handed alpha
Helix 32
AD5
D
72 85Right-handed alpha
Helix 33
AD6
D
89 108Right-handed alpha
Helix 34
AD7
D
149 157Right-handed alpha
Helix 35
AD8
C
2 10Right-handed alpha
Helix 36
AD9
C
18 40Right-handed alpha
Helix 37
AE1
C
41 50Right-handed 310
Helix 38
AE2
C
51 66Right-handed alpha
Helix 39
AE3
C
72 85Right-handed alpha
Helix 40
AE4
C
89 108Right-handed alpha
Helix 41
AE5
C
149 155Right-handed alpha
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There are 8 sheets in PDB entry 7DZ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
27 31parallel
Strand 3
A
2 7parallel
Strand 4
A
234 237parallel
Strand 5
A
192 195parallel
Strand 6
A
161 165parallel
Strand 7
A
132 135parallel
Strand 8
A
88 91parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
100 106anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
207 208anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
27 31parallel
Strand 3
B
52 56parallel
Strand 4
B
88 91parallel
Strand 5
B
132 135parallel
Strand 6
B
161 165parallel
Strand 7
B
192 195parallel
Strand 8
B
234 237parallel
Strand 9
B
2 7parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 97first strand
Strand 2
B
100 106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
207 208anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
162 167first strand
Strand 2
D
114 119anti-parallel
Strand 3
D
125 130anti-parallel
Strand 4
D
140 145anti-parallel
Strand 5
F
6 9anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 9first strand
Strand 2
C
140 145anti-parallel
Strand 3
C
125 130anti-parallel
Strand 4
C
114 119anti-parallel
Strand 5
C
162 167anti-parallel
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