Analysis of interatomic Contacts of Structural Units in PDB entry:
7DZN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7DZN entry

There are 5 chains in PDB entry 7DZN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3SER 279
B
 MET 0MET 99
C
 THR 1LEU 9
D
 ALA 3ASP 243
E
 ASP 3SER 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 7DZN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 55Right-handed 310
Helix 2
AA2
A
58 88Right-handed alpha
Helix 3
AA3
A
139 152Right-handed alpha
Helix 4
AA4
A
153 164Right-handed alpha
Helix 5
AA5
A
164 177Right-handed alpha
Helix 6
AA6
A
177 182Right-handed alpha
Helix 7
AA7
D
84 88Right-handed 310
Helix 8
AA8
D
115 119Right-handed 310
Helix 9
AA9
D
130 138Right-handed alpha
Helix 10
AB1
D
197 202Right-handed alpha
Helix 11
AB2
E
81 85Right-handed 310
Helix 12
AB3
E
96 100Right-handed 310
Helix 13
AB4
E
186 191Right-handed alpha
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There are 17 sheets in PDB entry 7DZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
33 39anti-parallel
Strand 3
A
23 30anti-parallel
Strand 4
A
5 14anti-parallel
Strand 5
A
96 105anti-parallel
Strand 6
A
111 120anti-parallel
Strand 7
A
123 128anti-parallel
Strand 8
A
135 137anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
200 210anti-parallel
Strand 3
A
243 252anti-parallel
Strand 4
A
230 232anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 195first strand
Strand 2
A
200 210anti-parallel
Strand 3
A
243 252anti-parallel
Strand 4
A
236 237anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
215 221anti-parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
272 275anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
50 51anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
62 70anti-parallel
Strand 4
B
55 56anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
35 41anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
91 94anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 8first strand
Strand 2
D
20 25anti-parallel
Strand 3
D
75 80anti-parallel
Strand 4
D
66 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
108 113parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
32 38anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
54 57anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 15first strand
Strand 2
D
108 113parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
103 104anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
139 149anti-parallel
Strand 3
D
187 196anti-parallel
Strand 4
D
169 171anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
123 127first strand
Strand 2
D
139 149anti-parallel
Strand 3
D
187 196anti-parallel
Strand 4
D
176 177anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 165first strand
Strand 2
D
154 160anti-parallel
Strand 3
D
206 213anti-parallel
Strand 4
D
232 239anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 15first strand
Strand 2
E
108 113parallel
Strand 3
E
86 93anti-parallel
Strand 4
E
34 40anti-parallel
Strand 5
E
47 52anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
20 25first strand
Strand 2
E
72 77anti-parallel
Strand 3
E
63 66anti-parallel
Strand 4
E
57 58anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 127first strand
Strand 2
E
135 140anti-parallel
Strand 3
E
171 180anti-parallel
Strand 4
E
156 158anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
122 127first strand
Strand 2
E
135 140anti-parallel
Strand 3
E
171 180anti-parallel
Strand 4
E
162 166anti-parallel
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