Analysis of interatomic Contacts of Structural Units in PDB entry:
7E1C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E1C entry

There are 12 chains in PDB entry 7E1C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 17THR 54
A
 LEU 57CYS 134
A
 HIS 136GLY 173
A
 THR 175LEU 203
A
 TYR 205ILE 222
A
 LYS 224TYR 230
A
 GLY 232THR 235
A
 MET 238PRO 250
A
 GLU 252ARG 261
A
 LEU 263LEU 307
A
 GLU 309VAL 319
A
 ILE 321LEU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 7E1C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 66Right-handed alpha
Helix 2
AA2
A
67 69Right-handed 310
Helix 3
AA3
A
88 102Right-handed alpha
Helix 4
AA4
A
123 138Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
194 211Right-handed alpha
Helix 7
AA7
A
215 227Right-handed alpha
Helix 8
AA8
A
257 280Right-handed alpha
Helix 9
AA9
A
281 282Right-handed 310
Helix 10
AB1
A
283 285Right-handed 310
Helix 11
AB2
A
286 294Right-handed alpha
Helix 12
AB3
A
299 304Right-handed 310
Helix 13
AB4
A
306 316Right-handed alpha
Helix 14
AB5
A
324 326Right-handed 310
Helix 15
AB6
A
327 344Right-handed alpha
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There are 5 sheets in PDB entry 7E1C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
21 25anti-parallel
Strand 4
A
113 118parallel
Strand 5
A
141 146parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
75 78anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
85 86anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 191first strand
Strand 2
A
175 181anti-parallel
Strand 3
A
165 170anti-parallel
Strand 4
A
295 298parallel
Strand 5
A
319 321parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
250 256anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il