Analysis of interatomic Contacts of Structural Units in PDB entry:
7E28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E28 entry

There are 2 chains in PDB entry 7E28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 248
B
 HIS 1GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 7E28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
34 49Right-handed alpha
Helix 3
AA3
A
63 75Right-handed alpha
Helix 4
AA4
A
93 97Right-handed 310
Helix 5
AA5
A
98 110Right-handed alpha
Helix 6
AA6
A
110 125Right-handed alpha
Helix 7
AA7
A
137 140Right-handed 310
Helix 8
AA8
A
147 171Right-handed alpha
Helix 9
AA9
A
210 224Right-handed alpha
Helix 10
AB1
B
12 24Right-handed alpha
Helix 11
AB2
B
34 49Right-handed alpha
Helix 12
AB3
B
63 75Right-handed alpha
Helix 13
AB4
B
93 97Right-handed 310
Helix 14
AB5
B
98 110Right-handed alpha
Helix 15
AB6
B
110 125Right-handed alpha
Helix 16
AB7
B
137 140Right-handed 310
Helix 17
AB8
B
147 171Right-handed alpha
Helix 18
AB9
B
210 224Right-handed alpha
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There are 4 sheets in PDB entry 7E28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 58first strand
Strand 2
A
27 32parallel
Strand 3
A
2 6parallel
Strand 4
A
78 84parallel
Strand 5
A
131 135parallel
Strand 6
A
176 181parallel
Strand 7
A
228 231parallel
Strand 8
A
238 241anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
B
246 247parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
B
142 143parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
27 32parallel
Strand 3
B
3 7parallel
Strand 4
B
79 84parallel
Strand 5
B
131 135parallel
Strand 6
B
176 181parallel
Strand 7
B
228 231parallel
Strand 8
B
238 241anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il