Analysis of interatomic Contacts of Structural Units in PDB entry:
7E34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E34 entry

There are 3 chains in PDB entry 7E34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 298
B
 GLY 61HIS 202
C
 GLU 137ASP 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 7E34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 56Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
129 131Right-handed 310
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
182 199Right-handed alpha
Helix 8
AA8
A
207 219Right-handed alpha
Helix 9
AA9
A
247 252Right-handed alpha
Helix 10
AB1
A
256 267Right-handed alpha
Helix 11
AB2
A
276 282Right-handed alpha
Helix 12
AB3
A
283 288Right-handed 310
Helix 13
AB4
B
68 76Right-handed alpha
Helix 14
AB5
B
77 79Right-handed 310
Helix 15
AB6
B
80 90Right-handed alpha
Helix 16
AB7
B
97 112Right-handed alpha
Helix 17
AB8
B
114 118Right-handed 310
Helix 18
AB9
B
119 135Right-handed alpha
Helix 19
AC1
B
139 143Right-handed 310
Helix 20
AC2
B
144 150Right-handed alpha
Helix 21
AC3
B
152 171Right-handed alpha
Helix 22
AC4
B
178 187Right-handed alpha
Helix 23
AC5
B
192 197Right-handed 310
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There are 4 sheets in PDB entry 7E34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 12first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
30 35anti-parallel
Strand 4
A
76 81anti-parallel
Strand 5
A
66 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
C
143 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il