Analysis of interatomic Contacts of Structural Units in PDB entry:
7E50


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E50 entry

There are 2 chains in PDB entry 7E50 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 56
B
 SER 545ASN 791
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 7E50. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 38Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
B
601 605Right-handed 310
Helix 4
AA4
B
610 612Right-handed 310
Helix 5
AA5
B
706 711Right-handed alpha
Helix 6
AA6
B
780 790Right-handed alpha
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There are 4 sheets in PDB entry 7E50. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
B
752 763anti-parallel
Strand 3
B
744 749anti-parallel
Strand 4
B
679 684anti-parallel
Strand 5
B
698 705anti-parallel
Strand 6
B
566 567anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
B
752 763anti-parallel
Strand 3
B
772 776anti-parallel
Strand 4
B
724 727anti-parallel
Strand 5
B
698 705anti-parallel
Strand 6
B
566 567anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 26first strand
Strand 2
A
18 20anti-parallel
Strand 3
A
48 50anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 581first strand
Strand 2
B
586 594anti-parallel
Strand 3
B
597 600anti-parallel
Strand 4
B
648 652anti-parallel
Strand 5
B
631 640anti-parallel
Strand 6
B
614 618anti-parallel
Strand 7
B
576 581anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il