Analysis of interatomic Contacts of Structural Units in PDB entry:
7E5Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7E5Y entry

There are 6 chains in PDB entry 7E5Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	THR 333	GLY 526
L	PRO 2	THR 210
H	VAL 2	PRO 218
A	THR 333	GLY 526
B	PRO 2	ASN 214
C	VAL 2	PRO 218

There are 25 helices in PDB entry 7E5Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	337	343	Right-handed alpha
Helix 2	AA2	R	349	353	Right-handed 310
Helix 3	AA3	R	364	371	Right-handed alpha
Helix 4	AA4	R	383	389	Right-handed alpha
Helix 5	AA5	R	405	410	Right-handed 310
Helix 6	AA6	R	416	422	Right-handed alpha
Helix 7	AA7	L	125	130	Right-handed alpha
Helix 8	AA8	L	186	191	Right-handed alpha
Helix 9	AA9	H	63	65	Right-handed 310
Helix 10	AB1	H	86	90	Right-handed 310
Helix 11	AB2	A	337	343	Right-handed alpha
Helix 12	AB3	A	365	371	Right-handed alpha
Helix 13	AB4	A	383	388	Right-handed alpha
Helix 14	AB5	A	405	410	Right-handed 310
Helix 15	AB6	A	416	422	Right-handed alpha
Helix 16	AB7	A	502	505	Right-handed 310
Helix 17	AB8	B	67	71	Right-handed 310
Helix 18	AB9	B	81	85	Right-handed 310
Helix 19	AC1	B	125	132	Right-handed alpha
Helix 20	AC2	B	187	193	Right-handed alpha
Helix 21	AC3	C	28	32	Right-handed 310
Helix 22	AC4	C	63	65	Right-handed 310
Helix 23	AC5	C	86	90	Right-handed 310
Helix 24	AC6	C	192	194	Right-handed 310
Helix 25	AC7	C	206	209	Right-handed 310

There are 28 sheets in PDB entry 7E5Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	358	first strand
Strand 2	R	395	403	anti-parallel
Strand 3	R	507	515	anti-parallel
Strand 4	R	432	437	anti-parallel
Strand 5	R	376	379	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	35	39	anti-parallel
Strand 5	L	47	50	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	106	110	parallel
Strand 3	L	87	94	anti-parallel
Strand 4	L	99	101	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	20	first strand
Strand 2	L	72	77	anti-parallel
Strand 3	L	64	69	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	122	first strand
Strand 2	L	136	143	anti-parallel
Strand 3	L	177	183	anti-parallel
Strand 4	L	164	165	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	35	39	anti-parallel
Strand 5	H	45	50	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	91	98	anti-parallel
Strand 4	H	105	108	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	127	129	first strand
Strand 2	H	144	150	anti-parallel
Strand 3	H	181	187	anti-parallel
Strand 4	H	168	175	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	210	212	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	199	205	anti-parallel
Strand 3	H	215	216	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	507	515	anti-parallel
Strand 4	A	432	437	anti-parallel
Strand 5	A	376	379	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	524	525	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	454	first strand
Strand 2	A	492	495	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	488	489	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	22	first strand
Strand 2	B	73	77	anti-parallel
Strand 3	B	63	66	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	87	93	anti-parallel
Strand 3	B	100	101	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	87	93	anti-parallel
Strand 3	B	106	107	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	54	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	133	141	anti-parallel
Strand 3	B	180	186	anti-parallel
Strand 4	B	163	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	148	154	anti-parallel
Strand 3	B	196	202	anti-parallel
Strand 4	B	209	212	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	17	24	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	110	114	parallel
Strand 3	C	91	96	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	129	first strand
Strand 2	C	140	146	anti-parallel
Strand 3	C	184	190	anti-parallel
Strand 4	C	169	171	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	181	182	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	156	159	first strand
Strand 2	C	200	205	anti-parallel
Strand 3	C	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7E5Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
7E5Y