Analysis of interatomic Contacts of Structural Units in PDB entry:
7E6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E6V entry

There are 2 chains in PDB entry 7E6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 99GLN 318
B
 ARG 100GLN 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 7E6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
115 133Right-handed alpha
Helix 2
AA2
A
168 178Right-handed alpha
Helix 3
AA3
A
189 193Right-handed 310
Helix 4
AA4
A
223 227Right-handed 310
Helix 5
AA5
A
246 251Right-handed alpha
Helix 6
AA6
A
266 271Right-handed alpha
Helix 7
AA7
A
292 313Right-handed alpha
Helix 8
AA8
B
115 133Right-handed alpha
Helix 9
AA9
B
169 179Right-handed alpha
Helix 10
AB1
B
246 252Right-handed alpha
Helix 11
AB2
B
266 271Right-handed alpha
Helix 12
AB3
B
292 313Right-handed alpha
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There are 4 sheets in PDB entry 7E6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
156 159parallel
Strand 3
A
201 206parallel
Strand 4
A
104 110parallel
Strand 5
A
229 235parallel
Strand 6
A
274 278anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
244 245anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
156 159parallel
Strand 3
B
201 206parallel
Strand 4
B
104 110parallel
Strand 5
B
229 235parallel
Strand 6
B
274 278anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
244 245anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il