Analysis of interatomic Contacts of Structural Units in PDB entry:
7E78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7E78 entry

There are 3 chains in PDB entry 7E78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 5	LYS 566
C	PRO 4	PRO 565
B	ALA 5	GLN 169

There are129 helices in PDB entry 7E78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	9	Right-handed 310
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	27	32	Right-handed alpha
Helix 4	AA4	A	34	41	Right-handed alpha
Helix 5	AA5	A	58	72	Right-handed alpha
Helix 6	AA6	A	73	84	Right-handed alpha
Helix 7	AA7	A	96	102	Right-handed 310
Helix 8	AA8	A	115	136	Right-handed alpha
Helix 9	AA9	A	154	157	Right-handed 310
Helix 10	AB1	A	158	169	Right-handed alpha
Helix 11	AB2	A	171	178	Right-handed alpha
Helix 12	AB3	A	190	199	Right-handed alpha
Helix 13	AB4	A	202	204	Right-handed 310
Helix 14	AB5	A	217	236	Right-handed alpha
Helix 15	AB6	A	239	243	Right-handed alpha
Helix 16	AB7	A	250	258	Right-handed alpha
Helix 17	AB8	A	260	262	Right-handed 310
Helix 18	AB9	A	272	276	Right-handed 310
Helix 19	AC1	A	279	291	Right-handed alpha
Helix 20	AC2	A	291	312	Right-handed alpha
Helix 21	AC3	A	313	316	Right-handed 310
Helix 22	AC4	A	317	332	Right-handed alpha
Helix 23	AC5	A	344	348	Right-handed 310
Helix 24	AC6	A	349	363	Right-handed alpha
Helix 25	AC7	A	388	392	Right-handed 310
Helix 26	AC8	A	393	400	Right-handed alpha
Helix 27	AC9	A	425	444	Right-handed alpha
Helix 28	AD1	A	446	452	Right-handed alpha
Helix 29	AD2	A	460	464	Right-handed 310
Helix 30	AD3	A	480	503	Right-handed alpha
Helix 31	AD4	A	509	511	Right-handed 310
Helix 32	AD5	A	512	533	Right-handed alpha
Helix 33	AD6	A	540	552	Right-handed alpha
Helix 34	AD7	C	6	9	Right-handed 310
Helix 35	AD8	C	10	25	Right-handed alpha
Helix 36	AD9	C	27	32	Right-handed alpha
Helix 37	AE1	C	34	41	Right-handed alpha
Helix 38	AE2	C	58	72	Right-handed alpha
Helix 39	AE3	C	73	83	Right-handed alpha
Helix 40	AE4	C	97	102	Right-handed 310
Helix 41	AE5	C	115	135	Right-handed alpha
Helix 42	AE6	C	154	157	Right-handed 310
Helix 43	AE7	C	158	169	Right-handed alpha
Helix 44	AE8	C	171	178	Right-handed alpha
Helix 45	AE9	C	190	199	Right-handed alpha
Helix 46	AF1	C	202	204	Right-handed 310
Helix 47	AF2	C	217	236	Right-handed alpha
Helix 48	AF3	C	238	243	Right-handed alpha
Helix 49	AF4	C	250	258	Right-handed alpha
Helix 50	AF5	C	260	262	Right-handed 310
Helix 51	AF6	C	272	276	Right-handed 310
Helix 52	AF7	C	279	312	Right-handed alpha
Helix 53	AF8	C	317	332	Right-handed alpha
Helix 54	AF9	C	344	348	Right-handed 310
Helix 55	AG1	C	349	363	Right-handed alpha
Helix 56	AG2	C	388	392	Right-handed 310
Helix 57	AG3	C	393	400	Right-handed alpha
Helix 58	AG4	C	425	444	Right-handed alpha
Helix 59	AG5	C	446	453	Right-handed alpha
Helix 60	AG6	C	456	464	Right-handed alpha
Helix 61	AG7	C	480	503	Right-handed alpha
Helix 62	AG8	C	512	533	Right-handed alpha
Helix 63	AG9	C	540	552	Right-handed alpha
Helix 64	AH1	B	6	9	Right-handed 310
Helix 65	AH2	B	10	25	Right-handed alpha
Helix 66	AH3	B	27	32	Right-handed alpha
Helix 67	AH4	B	34	41	Right-handed alpha
Helix 68	AH5	B	58	72	Right-handed alpha
Helix 69	AH6	B	73	84	Right-handed alpha
Helix 70	AH7	B	96	102	Right-handed 310
Helix 71	AH8	B	115	135	Right-handed alpha
Helix 72	AH9	B	154	157	Right-handed 310
Helix 73	AI1	B	158	170	Right-handed alpha
Helix 74	AI2	B	171	178	Right-handed alpha
Helix 75	AI3	B	190	199	Right-handed alpha
Helix 76	AI4	B	202	204	Right-handed 310
Helix 77	AI5	B	217	236	Right-handed alpha
Helix 78	AI6	B	239	243	Right-handed alpha
Helix 79	AI7	B	250	258	Right-handed alpha
Helix 80	AI8	B	260	264	Right-handed 310
Helix 81	AI9	B	272	278	Right-handed 310
Helix 82	AJ1	B	279	291	Right-handed alpha
Helix 83	AJ2	B	291	312	Right-handed alpha
Helix 84	AJ3	B	313	316	Right-handed 310
Helix 85	AJ4	B	317	332	Right-handed alpha
Helix 86	AJ5	B	344	348	Right-handed 310
Helix 87	AJ6	B	349	363	Right-handed alpha
Helix 88	AJ7	B	388	392	Right-handed 310
Helix 89	AJ8	B	393	400	Right-handed alpha
Helix 90	AJ9	B	425	444	Right-handed alpha
Helix 91	AK1	B	446	452	Right-handed alpha
Helix 92	AK2	B	456	461	Right-handed alpha
Helix 93	AK3	B	480	503	Right-handed alpha
Helix 94	AK4	B	509	511	Right-handed 310
Helix 95	AK5	B	512	533	Right-handed alpha
Helix 96	AK6	B	540	553	Right-handed alpha
Helix 97	AK7	D	6	9	Right-handed 310
Helix 98	AK8	D	10	25	Right-handed alpha
Helix 99	AK9	D	27	32	Right-handed alpha
Helix 100	AL1	D	34	41	Right-handed alpha
Helix 101	AL2	D	58	72	Right-handed alpha
Helix 102	AL3	D	73	83	Right-handed alpha
Helix 103	AL4	D	96	102	Right-handed 310
Helix 104	AL5	D	115	135	Right-handed alpha
Helix 105	AL6	D	154	157	Right-handed 310
Helix 106	AL7	D	158	169	Right-handed alpha
Helix 107	AL8	D	171	179	Right-handed alpha
Helix 108	AL9	D	190	199	Right-handed alpha
Helix 109	AM1	D	202	204	Right-handed 310
Helix 110	AM2	D	217	236	Right-handed alpha
Helix 111	AM3	D	239	243	Right-handed alpha
Helix 112	AM4	D	250	258	Right-handed alpha
Helix 113	AM5	D	260	262	Right-handed 310
Helix 114	AM6	D	272	276	Right-handed 310
Helix 115	AM7	D	279	291	Right-handed alpha
Helix 116	AM8	D	291	312	Right-handed alpha
Helix 117	AM9	D	313	316	Right-handed 310
Helix 118	AN1	D	317	332	Right-handed alpha
Helix 119	AN2	D	344	348	Right-handed 310
Helix 120	AN3	D	349	363	Right-handed alpha
Helix 121	AN4	D	388	392	Right-handed 310
Helix 122	AN5	D	393	400	Right-handed alpha
Helix 123	AN6	D	425	444	Right-handed alpha
Helix 124	AN7	D	446	453	Right-handed alpha
Helix 125	AN8	D	456	464	Right-handed alpha
Helix 126	AN9	D	480	503	Right-handed alpha
Helix 127	AO1	D	509	511	Right-handed 310
Helix 128	AO2	D	512	533	Right-handed alpha
Helix 129	AO3	D	540	553	Right-handed alpha

There are 12 sheets in PDB entry 7E78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	471	476	anti-parallel
Strand 4	A	405	410	parallel
Strand 5	A	337	342	parallel
Strand 6	A	380	383	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	A	113	114	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	186	first strand
Strand 2	A	148	152	parallel
Strand 3	A	206	211	parallel
Strand 4	A	244	248	parallel
Strand 5	A	264	266	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	48	51	anti-parallel
Strand 3	C	471	476	anti-parallel
Strand 4	C	405	410	parallel
Strand 5	C	337	342	parallel
Strand 6	C	380	382	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	113	114	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	186	first strand
Strand 2	C	148	152	parallel
Strand 3	C	206	211	parallel
Strand 4	C	244	248	parallel
Strand 5	C	264	266	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	45	first strand
Strand 2	B	48	51	anti-parallel
Strand 3	B	471	476	anti-parallel
Strand 4	B	405	410	parallel
Strand 5	B	337	342	parallel
Strand 6	B	380	383	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	110	first strand
Strand 2	B	113	114	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	186	first strand
Strand 2	B	148	152	parallel
Strand 3	B	206	211	parallel
Strand 4	B	244	247	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	48	51	anti-parallel
Strand 3	D	471	476	anti-parallel
Strand 4	D	405	410	parallel
Strand 5	D	337	342	parallel
Strand 6	D	380	382	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	110	first strand
Strand 2	D	113	114	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	186	first strand
Strand 2	D	148	152	parallel
Strand 3	D	206	211	parallel
Strand 4	D	244	247	parallel
Strand 5	D	264	265	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 7E78

Analysis of interatomic Contacts of Structural Units in PDB entry:
7E78