Analysis of interatomic Contacts of Structural Units in PDB entry:
7E7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E7F entry

There is 1 chain in PDB entry 7E7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 31ILE 502
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 7E7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 41Right-handed 310
Helix 2
AA2
A
51 60Right-handed alpha
Helix 3
AA3
A
63 76Right-handed alpha
Helix 4
AA4
A
93 103Right-handed alpha
Helix 5
AA5
A
113 124Right-handed alpha
Helix 6
AA6
A
133 149Right-handed alpha
Helix 7
AA7
A
150 179Right-handed alpha
Helix 8
AA8
A
188 206Right-handed alpha
Helix 9
AA9
A
217 239Right-handed alpha
Helix 10
AB1
A
241 243Right-handed 310
Helix 11
AB2
A
244 281Right-handed alpha
Helix 12
AB3
A
288 297Right-handed alpha
Helix 13
AB4
A
300 314Right-handed alpha
Helix 14
AB5
A
319 333Right-handed alpha
Helix 15
AB6
A
333 354Right-handed alpha
Helix 16
AB7
A
357 362Right-handed alpha
Helix 17
AB8
A
362 376Right-handed alpha
Helix 18
AB9
A
407 412Right-handed alpha
Helix 19
AC1
A
425 431Right-handed alpha
Helix 20
AC2
A
435 439Right-handed 310
Helix 21
AC3
A
445 449Right-handed 310
Helix 22
AC4
A
452 470Right-handed alpha
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There are 4 sheets in PDB entry 7E7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
78 83parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
402 406parallel
Strand 5
A
381 385anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 186first strand
Strand 2
A
497 501anti-parallel
Strand 3
A
471 474anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 392first strand
Strand 2
A
395 397anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 485first strand
Strand 2
A
489 491anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il