Analysis of interatomic Contacts of Structural Units in PDB entry:
7E7M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 7E7M entry

There are 4 chains in PDB entry 7E7M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 40TRP 322
B
 SER 43TRP 322
C
 VAL 39TRP 322
D
 GLY 50TRP 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 7E7M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 75Right-handed alpha
Helix 2
AA2
A
87 102Right-handed alpha
Helix 3
AA3
A
115 126Right-handed alpha
Helix 4
AA4
A
149 166Right-handed alpha
Helix 5
AA5
A
180 193Right-handed alpha
Helix 6
AA6
A
209 224Right-handed alpha
Helix 7
AA7
A
234 248Right-handed alpha
Helix 8
AA8
A
261 270Right-handed alpha
Helix 9
AA9
A
280 296Right-handed alpha
Helix 10
AB1
B
58 75Right-handed alpha
Helix 11
AB2
B
87 102Right-handed alpha
Helix 12
AB3
B
116 126Right-handed alpha
Helix 13
AB4
B
149 166Right-handed alpha
Helix 14
AB5
B
180 197Right-handed alpha
Helix 15
AB6
B
209 222Right-handed alpha
Helix 16
AB7
B
234 247Right-handed alpha
Helix 17
AB8
B
261 270Right-handed alpha
Helix 18
AB9
B
280 296Right-handed alpha
Helix 19
AC1
B
313 317Right-handed 310
Helix 20
AC2
C
43 46Right-handed 310
Helix 21
AC3
C
58 75Right-handed alpha
Helix 22
AC4
C
87 102Right-handed alpha
Helix 23
AC5
C
115 126Right-handed alpha
Helix 24
AC6
C
149 166Right-handed alpha
Helix 25
AC7
C
180 198Right-handed alpha
Helix 26
AC8
C
209 224Right-handed alpha
Helix 27
AC9
C
234 249Right-handed alpha
Helix 28
AD1
C
261 270Right-handed alpha
Helix 29
AD2
C
280 296Right-handed alpha
Helix 30
AD3
C
313 317Right-handed 310
Helix 31
AD4
D
58 75Right-handed alpha
Helix 32
AD5
D
87 102Right-handed alpha
Helix 33
AD6
D
116 126Right-handed alpha
Helix 34
AD7
D
149 166Right-handed alpha
Helix 35
AD8
D
180 197Right-handed alpha
Helix 36
AD9
D
209 224Right-handed alpha
Helix 37
AE1
D
234 247Right-handed alpha
Helix 38
AE2
D
261 271Right-handed alpha
Helix 39
AE3
D
280 296Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 7E7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
48 53parallel
Strand 3
A
105 108parallel
Strand 4
A
130 133parallel
Strand 5
A
144 148parallel
Strand 6
A
304 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 205first strand
Strand 2
A
169 175parallel
Strand 3
A
229 232parallel
Strand 4
A
254 259parallel
Strand 5
A
275 278parallel
Strand 6
A
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 83first strand
Strand 2
B
48 53parallel
Strand 3
B
105 108parallel
Strand 4
B
130 133parallel
Strand 5
B
144 148parallel
Strand 6
B
305 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 205first strand
Strand 2
B
169 175parallel
Strand 3
B
229 232parallel
Strand 4
B
254 259parallel
Strand 5
B
275 278parallel
Strand 6
B
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 83first strand
Strand 2
C
48 53parallel
Strand 3
C
105 108parallel
Strand 4
C
130 133parallel
Strand 5
C
144 148parallel
Strand 6
C
304 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
199 205first strand
Strand 2
C
170 175parallel
Strand 3
C
229 232parallel
Strand 4
C
254 258parallel
Strand 5
C
275 278parallel
Strand 6
C
310 312anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
81 83first strand
Strand 2
D
51 53parallel
Strand 3
D
106 108parallel
Strand 4
D
130 133parallel
Strand 5
D
144 148parallel
Strand 6
D
305 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
198 205first strand
Strand 2
D
169 175parallel
Strand 3
D
229 232parallel
Strand 4
D
254 259parallel
Strand 5
D
275 278parallel
Strand 6
D
310 312anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il