Analysis of interatomic Contacts of Structural Units in PDB entry:
7E88

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 7E88 entry

There are 7 chains in PDB entry 7E88 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 216
B	ASP 1	GLY 212
C	THR 333	GLY 526
D	VAL 2	PRO 216
E	ASP 1	GLY 212
F	ASN 334	GLY 526
G	VAL 2	LYS 75

There are 57 helices in PDB entry 7E88. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	32	Right-handed 310
Helix 2	AA2	A	61	64	Right-handed 310
Helix 3	AA3	A	73	75	Right-handed 310
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	159	161	Right-handed 310
Helix 6	AA6	A	190	192	Right-handed 310
Helix 7	AA7	A	204	207	Right-handed 310
Helix 8	AA8	B	79	83	Right-handed 310
Helix 9	AA9	B	121	126	Right-handed alpha
Helix 10	AB1	B	183	187	Right-handed alpha
Helix 11	AB2	C	337	343	Right-handed alpha
Helix 12	AB3	C	349	353	Right-handed 310
Helix 13	AB4	C	365	370	Right-handed alpha
Helix 14	AB5	C	405	410	Right-handed 310
Helix 15	AB6	C	416	422	Right-handed alpha
Helix 16	AB7	C	502	505	Right-handed 310
Helix 17	AB8	D	28	32	Right-handed 310
Helix 18	AB9	D	86	90	Right-handed 310
Helix 19	AC1	D	159	161	Right-handed 310
Helix 20	AC2	D	188	192	Right-handed 310
Helix 21	AC3	D	205	207	Right-handed 310
Helix 22	AC4	E	79	83	Right-handed 310
Helix 23	AC5	E	121	128	Right-handed alpha
Helix 24	AC6	E	183	187	Right-handed alpha
Helix 25	AC7	F	337	342	Right-handed alpha
Helix 26	AC8	F	365	370	Right-handed alpha
Helix 27	AC9	F	383	387	Right-handed 310
Helix 28	AD1	F	405	410	Right-handed 310
Helix 29	AD2	F	416	422	Right-handed alpha
Helix 30	AD3	F	502	505	Right-handed 310
Helix 31	AD4	G	28	32	Right-handed 310
Helix 32	AD5	G	86	90	Right-handed 310
Helix 33	AD6	G	159	161	Right-handed 310
Helix 34	AD7	G	204	207	Right-handed 310
Helix 35	AD8	H	79	83	Right-handed 310
Helix 36	AD9	H	121	128	Right-handed alpha
Helix 37	AE1	H	183	187	Right-handed alpha
Helix 38	AE2	I	337	341	Right-handed 310
Helix 39	AE3	I	364	370	Right-handed alpha
Helix 40	AE4	I	405	410	Right-handed 310
Helix 41	AE5	I	416	422	Right-handed alpha
Helix 42	AE6	I	502	505	Right-handed 310
Helix 43	AE7	J	28	32	Right-handed 310
Helix 44	AE8	J	73	75	Right-handed 310
Helix 45	AE9	J	86	90	Right-handed 310
Helix 46	AF1	J	159	161	Right-handed 310
Helix 47	AF2	J	204	207	Right-handed 310
Helix 48	AF3	K	79	83	Right-handed 310
Helix 49	AF4	K	121	126	Right-handed alpha
Helix 50	AF5	K	183	187	Right-handed alpha
Helix 51	AF6	L	338	343	Right-handed alpha
Helix 52	AF7	L	349	353	Right-handed 310
Helix 53	AF8	L	365	370	Right-handed alpha
Helix 54	AF9	L	384	388	Right-handed 310
Helix 55	AG1	L	405	410	Right-handed 310
Helix 56	AG2	L	416	422	Right-handed alpha
Helix 57	AG3	L	502	505	Right-handed 310

There are 59 sheets in PDB entry 7E88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	18	24	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	110	114	parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	110	114	parallel
Strand 3	A	91	98	anti-parallel
Strand 4	A	103	106	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	138	148	anti-parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	167	168	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	127	first strand
Strand 2	A	138	148	anti-parallel
Strand 3	A	179	188	anti-parallel
Strand 4	A	172	173	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	208	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	66	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	102	107	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	44	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	102	107	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	173	182	anti-parallel
Strand 4	B	159	163	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	210	first strand
Strand 2	B	191	198	anti-parallel
Strand 3	B	144	150	anti-parallel
Strand 4	B	153	156	anti-parallel
Strand 5	F	465	467	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	507	515	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	110	114	parallel
Strand 3	D	91	99	anti-parallel
Strand 4	D	102	106	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	139	148	anti-parallel
Strand 3	D	179	187	anti-parallel
Strand 4	D	167	168	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	127	first strand
Strand 2	D	139	148	anti-parallel
Strand 3	D	179	187	anti-parallel
Strand 4	D	172	173	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	157	first strand
Strand 2	D	197	203	anti-parallel
Strand 3	D	208	214	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	66	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	44	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	129	139	anti-parallel
Strand 3	E	173	182	anti-parallel
Strand 4	E	159	163	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	153	155	first strand
Strand 2	E	145	150	anti-parallel
Strand 3	E	191	197	anti-parallel
Strand 4	E	205	210	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	395	403	parallel
Strand 3	F	354	358	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	348	349	first strand
Strand 2	F	395	403	parallel
Strand 3	F	507	515	anti-parallel
Strand 4	F	431	437	anti-parallel
Strand 5	F	376	379	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	361	362	first strand
Strand 2	F	524	525	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	452	454	first strand
Strand 2	F	492	494	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	473	474	first strand
Strand 2	F	488	489	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	18	24	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	72	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	91	99	anti-parallel
Strand 4	G	33	39	anti-parallel
Strand 5	G	45	51	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	110	114	parallel
Strand 3	G	91	99	anti-parallel
Strand 4	G	102	105	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	179	188	anti-parallel
Strand 4	G	167	168	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	123	127	first strand
Strand 2	G	138	148	anti-parallel
Strand 3	G	179	188	anti-parallel
Strand 4	G	172	173	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	199	203	anti-parallel
Strand 3	G	208	211	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	70	75	anti-parallel
Strand 4	H	62	67	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	102	107	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	33	38	anti-parallel
Strand 5	H	44	49	anti-parallel
Strand 6	H	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	102	107	parallel
Strand 3	H	84	90	anti-parallel
Strand 4	H	97	98	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	115	118	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	173	182	anti-parallel
Strand 4	H	159	163	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	154	155	first strand
Strand 2	H	145	150	anti-parallel
Strand 3	H	191	197	anti-parallel
Strand 4	H	205	210	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	354	358	first strand
Strand 2	I	395	403	anti-parallel
Strand 3	I	507	515	anti-parallel
Strand 4	I	431	437	anti-parallel
Strand 5	I	376	379	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	361	362	first strand
Strand 2	I	524	525	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	452	454	first strand
Strand 2	I	492	494	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	465	467	first strand
Strand 2	K	154	156	parallel
Strand 3	K	145	150	anti-parallel
Strand 4	K	191	197	anti-parallel
Strand 5	K	205	210	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	473	474	first strand
Strand 2	I	488	489	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	72	anti-parallel

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There are 6 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	110	114	parallel
Strand 3	J	91	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	110	114	parallel
Strand 3	J	91	99	anti-parallel
Strand 4	J	102	106	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	138	148	anti-parallel
Strand 3	J	179	188	anti-parallel
Strand 4	J	167	168	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	123	127	first strand
Strand 2	J	138	148	anti-parallel
Strand 3	J	179	188	anti-parallel
Strand 4	J	172	173	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	156	157	first strand
Strand 2	J	197	203	anti-parallel
Strand 3	J	208	214	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	7	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	66	anti-parallel

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There are 6 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	102	107	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	33	38	anti-parallel
Strand 5	K	44	49	anti-parallel
Strand 6	K	53	54	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	14	first strand
Strand 2	K	102	107	parallel
Strand 3	K	84	90	anti-parallel
Strand 4	K	97	98	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	114	118	first strand
Strand 2	K	129	139	anti-parallel
Strand 3	K	173	182	anti-parallel
Strand 4	K	159	163	anti-parallel

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There are 5 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	354	358	first strand
Strand 2	L	395	403	anti-parallel
Strand 3	L	507	515	anti-parallel
Strand 4	L	431	437	anti-parallel
Strand 5	L	376	379	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	361	362	first strand
Strand 2	L	524	525	parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	452	454	first strand
Strand 2	L	492	494	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	473	474	first strand
Strand 2	L	488	489	anti-parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 7E88

Analysis of interatomic Contacts of Structural Units in PDB entry:
7E88